Mir-130-P4a3

MirGeneDB ID

Xla-Mir-130-P4a3

Family name

MIR-130 (all species)

Seed

AGUGCAA

Species

African clawed frog (Xenopus laevis)

MiRBase ID

Paralogues

Xla-Mir-130-P1a3 Xla-Mir-130-P1a4 Xla-Mir-130-P1b3 Xla-Mir-130-P1b4 Xla-Mir-130-P2a3 Xla-Mir-130-P2a4 Xla-Mir-130-P2b3 Xla-Mir-130-P2b4 Xla-Mir-130-P3a3 Xla-Mir-130-P3a4 Xla-Mir-130-P4a4

Orthologues

Aca-Mir-130-P4a Bta-Mir-130-P4a Cfa-Mir-130-P4a Cja-Mir-130-P4a Cmi-Mir-130-P4a Cpi-Mir-130-P4a Cpo-Mir-130-P4a Dno-Mir-130-P4a Eca-Mir-130-P4a Ete-Mir-130-P4a Gga-Mir-130-P4a Gja-Mir-130-P4a Hsa-Mir-130-P4a Laf-Mir-130-P4a Lch-Mir-130-P4a Loc-Mir-130-P4a Mdo-Mir-130-P4a Mml-Mir-130-P4a Mmr-Mir-130-P4a Mmu-Mir-130-P4a Mun-Mir-130-P4a Ocu-Mir-130-P4a Pab-Mir-130-P4a Pbv-Mir-130-P4a Rno-Mir-130-P4a Sha-Mir-130-P4a Spt-Mir-130-P4a Sto-Mir-130-P4a Tgu-Mir-130-P4a Xtr-Mir-130-P4a

Node of Origin (locus)

X. laevis

Node of Origin (family)

Vertebrata

Genome context
(GCF_001663975.1_XLA_v2)

NC_030724.1: 153951773-153951832 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GGCAGUAAGUGGGUGCCCAGGCAGUCUGACACUCUUUCCCUGUUGCACUACUGUGCCAGUGAAUAAAGCAGUGCAAUGAUGAAAGGGCAUCAGUCUGCGGCUGAUCUCAGCACCGUGCCC

Get precursor sequence

Structure

        10        20          30        40        50         
GGCAGUAAGUGGGUGCCCAG--|   U    CA       CC         A  GUGCCA 
                      GCAG CUGA  CUCUUUC  UGUUGCACU CU      G
                      CGUC GACU  GGGAAAG  GUAACGUGA GA      U
CCCGUGCCACGACUCUAGUCGG^   U    AC       UA         C  AAUAAG 
.       110       100        90        80        70        60

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17), UGUG in loop

Tissue expression

Eg	Em	Em	He	Ki	Re	St	St

Star sequence

Xla-Mir-130-P4a3_5p*

mirBase accession

None

Sequence

0- ACUCUUUCCCUGUUGCACUACU -22

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Mature sequence

Xla-Mir-130-P4a3_3p

mirBase accession

None

Sequence

38- CAGUGCAAUGAUGAAAGGGCAU -60

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