MirGeneDB 3.0

MirGeneDB ID

Rno-Mir-130-P4a

Family name MIR-130 (all species)
Seed AGUGCAA
Species Norway rat (Rattus norvegicus)
MiRBase ID rno-mir-130b
Paralogues Rno-Mir-130-P1c  Rno-Mir-130-P2a  Rno-Mir-130-P2b 
Orthologues Aca-Mir-130-P4a  Bta-Mir-130-P4a  Cfa-Mir-130-P4a  Cja-Mir-130-P4a  Cmi-Mir-130-P4a  Cpi-Mir-130-P4a  Cpo-Mir-130-P4a  Dno-Mir-130-P4a  Dre-Mir-130-P4a1  Eca-Mir-130-P4a  Ete-Mir-130-P4a  Gga-Mir-130-P4a  Gja-Mir-130-P4a  Hsa-Mir-130-P4a  Laf-Mir-130-P4a  Lch-Mir-130-P4a  Loc-Mir-130-P4a  Mal-Mir-130-P4a1  Mdo-Mir-130-P4a  Mml-Mir-130-P4a  Mmr-Mir-130-P4a  Mmu-Mir-130-P4a  Mun-Mir-130-P4a  Ocu-Mir-130-P4a  Pab-Mir-130-P4a  Pbv-Mir-130-P4a  Sha-Mir-130-P4a  Spt-Mir-130-P4a  Sto-Mir-130-P4a  Tgu-Mir-130-P4a  Xla-Mir-130-P4a3  Xla-Mir-130-P4a4  Xtr-Mir-130-P4a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(rn6)
chr11: 88129785-88129844 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-130-P4a)
Mir-130-P2a chr11: 88129435-88129494 [+] UCSC Ensembl
Mir-130-P4a chr11: 88129785-88129844 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UACCCCUUGAGACUGACUGGCUUGCUGGACACUCUUUCCCUGUUGCACUACUGUGGGCCUCUGGGAAGCAGUGCAAUGAUGAAAGGGCAUCCGUCAGGCCAGCUAAGGAACCUGAAGUAC
Get precursor sequence
Structure
        10          20        30        40        50         
UACCCCUUGAGACUGAC--|      C    CA       CC         A  GUGGGC 
                   UGGCUUG UGGA  CUCUUUC  UGUUGCACU CU      C
                   ACCGGAC GCCU  GGGAAAG  GUAACGUGA GA      U
CAUGAAGUCCAAGGAAUCG^      U    AC       UA         C  AGGGUC 
.       110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU Yes
MotifsUGUG in loop
Tissue expression
 +
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Star sequence

Rno-Mir-130-P4a_5p*

mirBase accessionMIMAT0017122
Sequence
0- ACUCUUUCCCUGUUGCACUACU -22
Get sequence
Proposed targets TargetScanVert: rno-miR-130b-5p
miRDB: MIMAT0017122
Mature sequence

Rno-Mir-130-P4a_3p

mirBase accessionMIMAT0000837
Sequence
38- CAGUGCAAUGAUGAAAGGGCAU -60
Get sequence
Proposed targets microrna.org: MIMAT0000837
TargetScanVert: rno-miR-130b-3p
miRDB: MIMAT0000837