MirGeneDB ID | Lch-Mir-130-P4a |
---|---|
Family name | MIR-130 (all species) |
Seed | AGUGCAA |
Species | Coelacanth (Latimeria chalumnae) |
MiRBase ID | |
Paralogues | Lch-Mir-130-P1a Lch-Mir-130-P1b Lch-Mir-130-P1c Lch-Mir-130-P1d Lch-Mir-130-P2a Lch-Mir-130-P2b Lch-Mir-130-P2d Lch-Mir-130-P3a Lch-Mir-130-P3b Lch-Mir-130-P3c |
Orthologues | Aca-Mir-130-P4a Bta-Mir-130-P4a Cfa-Mir-130-P4a Cja-Mir-130-P4a Cmi-Mir-130-P4a Cpi-Mir-130-P4a Cpo-Mir-130-P4a Dno-Mir-130-P4a Dre-Mir-130-P4a1 Eca-Mir-130-P4a Ete-Mir-130-P4a Gga-Mir-130-P4a Gja-Mir-130-P4a Hsa-Mir-130-P4a Laf-Mir-130-P4a Loc-Mir-130-P4a Mal-Mir-130-P4a1 Mdo-Mir-130-P4a Mml-Mir-130-P4a Mmr-Mir-130-P4a Mmu-Mir-130-P4a Mun-Mir-130-P4a Ocu-Mir-130-P4a Pab-Mir-130-P4a Pbv-Mir-130-P4a Rno-Mir-130-P4a Sha-Mir-130-P4a Spt-Mir-130-P4a Sto-Mir-130-P4a Tgu-Mir-130-P4a Xla-Mir-130-P4a3 Xla-Mir-130-P4a4 Xtr-Mir-130-P4a |
Node of Origin (locus) | Gnathostomata |
Node of Origin (family) | Vertebrata |
Genome context (LatCha1_add) |
JH126620.1: 792824-792880 [-] Ensembl |
Precursor (pre-Mir +30nt flank) | GCUAUAGAAUUUAGAAGUGGACUGCCUGUCACUCUUUCCCUGUUGCACUACUGUGGAACCUCUAGCAGUGCAAUAAUGAAAGGGCGUCAGUCUGCCAAUCUUAACACUUCUGCACACGet precursor sequence |
Structure | 10 20 30 40 50 GCUAUAGAAUUUAGAAG---| ACUGC UCA CC A GUGGA UGG CUG CUCUUUC UGUUGCACU CU \ ACC GAC GGGAAAG AUAACGUGA GA A CACACGUCUUCACAAUUCUA^ GUCU- UGC UA C UCUCC 110 100 90 80 70 60 |
Deep sequencing | |
3' NTU | Unknown |
Motifs | UGUG in loop |
Star sequence | Lch-Mir-130-P4a_5p* (predicted) |
mirBase accession | None |
Sequence |
0- ACUCUUUCCCUGUUGCACUACU -22
Get sequence
|
Mature sequence | Lch-Mir-130-P4a_3p (predicted) |
mirBase accession | None |
Sequence |
35- CAGUGCAAUAAUGAAAGGGCGU -57
Get sequence
|