MirGeneDB 3.0

MirGeneDB ID

Lch-Mir-130-P4a

Family name MIR-130 (all species)
Seed AGUGCAA
Species Coelacanth (Latimeria chalumnae)
MiRBase ID
Paralogues Lch-Mir-130-P1a  Lch-Mir-130-P1b  Lch-Mir-130-P1c  Lch-Mir-130-P1d  Lch-Mir-130-P2a  Lch-Mir-130-P2b  Lch-Mir-130-P2d  Lch-Mir-130-P3a  Lch-Mir-130-P3b  Lch-Mir-130-P3c 
Orthologues Aca-Mir-130-P4a  Bta-Mir-130-P4a  Cfa-Mir-130-P4a  Cja-Mir-130-P4a  Cmi-Mir-130-P4a  Cpi-Mir-130-P4a  Cpo-Mir-130-P4a  Dno-Mir-130-P4a  Dre-Mir-130-P4a1  Eca-Mir-130-P4a  Ete-Mir-130-P4a  Gga-Mir-130-P4a  Gja-Mir-130-P4a  Hsa-Mir-130-P4a  Laf-Mir-130-P4a  Loc-Mir-130-P4a  Mal-Mir-130-P4a1  Mdo-Mir-130-P4a  Mml-Mir-130-P4a  Mmr-Mir-130-P4a  Mmu-Mir-130-P4a  Mun-Mir-130-P4a  Ocu-Mir-130-P4a  Pab-Mir-130-P4a  Pbv-Mir-130-P4a  Rno-Mir-130-P4a  Sha-Mir-130-P4a  Spt-Mir-130-P4a  Sto-Mir-130-P4a  Tgu-Mir-130-P4a  Xla-Mir-130-P4a3  Xla-Mir-130-P4a4  Xtr-Mir-130-P4a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(LatCha1_add)
JH126620.1: 792824-792880 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
GCUAUAGAAUUUAGAAGUGGACUGCCUGUCACUCUUUCCCUGUUGCACUACUGUGGAACCUCUAGCAGUGCAAUAAUGAAAGGGCGUCAGUCUGCCAAUCUUAACACUUCUGCACAC
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Structure
        10           20        30        40        50        
GCUAUAGAAUUUAGAAG---|  ACUGC   UCA       CC         A  GUGGA 
                    UGG     CUG   CUCUUUC  UGUUGCACU CU     \
                    ACC     GAC   GGGAAAG  AUAACGUGA GA     A
CACACGUCUUCACAAUUCUA^  GUCU-   UGC       UA         C  UCUCC 
     110       100         90        80        70        60
Deep sequencing
3' NTU Unknown
MotifsUGUG in loop
Star sequence

Lch-Mir-130-P4a_5p* (predicted)

mirBase accessionNone
Sequence
0- ACUCUUUCCCUGUUGCACUACU -22
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Mature sequence

Lch-Mir-130-P4a_3p (predicted)

mirBase accessionNone
Sequence
35- CAGUGCAAUAAUGAAAGGGCGU -57
Get sequence