MirGeneDB 2.1

MirGeneDB ID

Lch-Mir-130-P1b

Family name MIR-130 (all species)
Seed AGUGCAA
Species Coelacanth (Latimeria chalumnae)
MiRBase ID
Paralogues Lch-Mir-130-P1a  Lch-Mir-130-P1c  Lch-Mir-130-P1d  Lch-Mir-130-P2a  Lch-Mir-130-P2b  Lch-Mir-130-P2d  Lch-Mir-130-P3a  Lch-Mir-130-P3b  Lch-Mir-130-P3c  Lch-Mir-130-P4a 
Orthologues Aca-Mir-130-P1b  Ami-Mir-130-P1b  Cli-Mir-130-P1b  Cmi-Mir-130-P1b  Cpi-Mir-130-P1b  Dre-Mir-130-P1b1  Gga-Mir-130-P1b  Gja-Mir-130-P1b  Loc-Mir-130-P1b  Mdo-Mir-130-P1b  Mun-Mir-130-P1b  Oan-Mir-130-P1b  Pbv-Mir-130-P1b  Sha-Mir-130-P1b  Spt-Mir-130-P1b  Sto-Mir-130-P1b  Tgu-Mir-130-P1b  Xla-Mir-130-P1b3  Xla-Mir-130-P1b4  Xtr-Mir-130-P1b 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(LatCha1_add)
JH126567.1: 194546-194608 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
GUCUUUUGGGUAAUGCUCUGCCUGUCCAGCGCCCUUUUUAUGUUGUACUACUGGUGACAAUAUAAUAAAAGCAGUGCAAUGUUAAAAGGGCAUUGGCCAGUAAUUCUGUCCAUGCUACCAUCU
Get precursor sequence
Structure
        10        20          30        40        50        60 
GUCUUUUGGGUAAUGCUCUGC--|  U    C        U          A  GGUGACAA 
                       CUG CCAG GCCCUUUU AUGUUGUACU CU        \
                       GAC GGUU CGGGAAAA UGUAACGUGA GA        U
UCUACCAUCGUACCUGUCUUAAU^  C    A        U          C  AAAUAAUA 
 120       110       100        90        80        70
Deep sequencing
3' NTU Unknown
MotifsNo
Star sequence

Lch-Mir-130-P1b_5p* (predicted)

mirBase accessionNone
Sequence
0- GCCCUUUUUAUGUUGUACUACU -22
Get sequence
Mature sequence

Lch-Mir-130-P1b_3p (predicted)

mirBase accessionNone
Sequence
41- CAGUGCAAUGUUAAAAGGGCAU -63
Get sequence