MirGeneDB 3.0

MirGeneDB ID

Pbv-Mir-130-P1b

Family name MIR-130 (all species)
Seed AGUGCAA
Species Burmese python (Python bivittatus)
MiRBase ID pbv-mir-130d
Paralogues Pbv-Mir-130-P1a  Pbv-Mir-130-P1c  Pbv-Mir-130-P2a  Pbv-Mir-130-P2b  Pbv-Mir-130-P3a  Pbv-Mir-130-P4a 
Orthologues Aca-Mir-130-P1b  Ami-Mir-130-P1b  Cli-Mir-130-P1b  Cmi-Mir-130-P1b  Cpi-Mir-130-P1b  Dre-Mir-130-P1b1  Gga-Mir-130-P1b  Gja-Mir-130-P1b  Lch-Mir-130-P1b  Loc-Mir-130-P1b  Mdo-Mir-130-P1b  Mun-Mir-130-P1b  Oan-Mir-130-P1b  Sha-Mir-130-P1b  Spt-Mir-130-P1b  Sto-Mir-130-P1b  Tgu-Mir-130-P1b  Xla-Mir-130-P1b3  Xla-Mir-130-P1b4  Xtr-Mir-130-P1b 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCA_000186305.2_Python_molurus_bivittatus)
KE959299.1: 49968-50030 [-]
Clustered miRNAs
(< 50kb from Mir-130-P1b)
Mir-130-P2b KE959299.1: 49099-49160 [-]
Mir-130-P1b KE959299.1: 49968-50030 [-]
Precursor
(pre-Mir +30nt flank)
UUUCUGGAUGGCAAGAGGUGUCUGUCCACUGCCCUUUUUAUGUUGUACUACUAGUGAACACACACAAAAAGCAGUGCAAUGUUAAAAGGGCAUUGGCCAGCAAUGCUCAGUCAGCUAAAAUGC
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Structure
        10           20        30        40        50        60 
UUUCUGGAUGGCAAGAGG---| U   U   C         U          A  AGUGAACA 
                     UG CUG CCA UGCCCUUUU AUGUUGUACU CU        \
                     AC GAC GGU ACGGGAAAA UGUAACGUGA GA        C
CGUAAAAUCGACUGACUCGUA^ -   C   U         U          C  AAAACACA 
 120       110        100        90        80        70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
To
Star sequence

Pbv-Mir-130-P1b_5p*

mirBase accessionMIMAT0038931
Sequence
0- GCCCUUUUUAUGUUGUACUACU -22
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Mature sequence

Pbv-Mir-130-P1b_3p

mirBase accessionMIMAT0038932
Sequence
41- CAGUGCAAUGUUAAAAGGGCAU -63
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