MirGeneDB 2.1

MirGeneDB ID

Mdo-Mir-130-P1b

Family name MIR-130 (all species)
Seed AGUGCAA
Species Gray short-tailed opossum (Monodelphis domestica)
MiRBase ID mdo-mir-130c-1
Paralogues Mdo-Mir-130-P1a  Mdo-Mir-130-P1c  Mdo-Mir-130-P2b  Mdo-Mir-130-P3b  Mdo-Mir-130-P4a 
Orthologues Aca-Mir-130-P1b  Ami-Mir-130-P1b  Cli-Mir-130-P1b  Cmi-Mir-130-P1b  Cpi-Mir-130-P1b  Dre-Mir-130-P1b1  Gga-Mir-130-P1b  Gja-Mir-130-P1b  Lch-Mir-130-P1b  Loc-Mir-130-P1b  Mun-Mir-130-P1b  Oan-Mir-130-P1b  Pbv-Mir-130-P1b  Sha-Mir-130-P1b  Spt-Mir-130-P1b  Sto-Mir-130-P1b  Tgu-Mir-130-P1b  Xla-Mir-130-P1b3  Xla-Mir-130-P1b4  Xtr-Mir-130-P1b 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(monDom5_add)
2: 172985794-172985856 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-130-P1b)
Mir-130-P1b 2: 172985794-172985856 [+] UCSC Ensembl
Mir-130-P2b 2: 172986787-172986848 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AUCUUAUUGACUGAAUGGUAUUUGUCUAGUGCCCUUUUUAUGUUGUACUACUAGUGAUCCUGCACAAGAAGCAGUGCAAUGUUAAAAGGGCAUUGGCCAGUGAUACCAGUCACAUUUCUGGGC
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Structure
        10        20          30        40        50        60 
AUCUUAUUGACUGAAUGGUAU--|  U             U          A  AGUGAUCC 
                       UUG CUAGUGCCCUUUU AUGUUGUACU CU        \
                       GAC GGUUACGGGAAAA UGUAACGUGA GA        U
CGGGUCUUUACACUGACCAUAGU^  C             U          C  AGAACACG 
 120       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
Br Ce He Ki Te
Star sequence

Mdo-Mir-130-P1b_5p* (predicted)

mirBase accessionMIMAT0028514
Sequence
0- GCCCUUUUUAUGUUGUACUACU -22
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Proposed targets TargetScanVert: mdo-miR-130c-1-5p
Mature sequence

Mdo-Mir-130-P1b_3p

mirBase accessionMIMAT0028515
Sequence
41- CAGUGCAAUGUUAAAAGGGCAU -63
Get sequence
Proposed targets TargetScanVert: mdo-miR-130c-3p