MirGeneDB ID | Sto-Mir-130-P1b |
Family name |
MIR-130 (all species) |
Seed |
AGUGCAA |
Species |
Cloudy Catshark (Scyliorhinus torazame) |
MiRBase ID |
|
Paralogues |
Sto-Mir-130-P1a
Sto-Mir-130-P1c
Sto-Mir-130-P2a
Sto-Mir-130-P2b
Sto-Mir-130-P3a
Sto-Mir-130-P3b
Sto-Mir-130-P3c
Sto-Mir-130-P4a
|
Orthologues |
Aca-Mir-130-P1b
Ami-Mir-130-P1b
Cli-Mir-130-P1b
Cmi-Mir-130-P1b
Cpi-Mir-130-P1b
Dre-Mir-130-P1b1
Gga-Mir-130-P1b
Gja-Mir-130-P1b
Lch-Mir-130-P1b
Loc-Mir-130-P1b
Mdo-Mir-130-P1b
Mun-Mir-130-P1b
Oan-Mir-130-P1b
Pbv-Mir-130-P1b
Sha-Mir-130-P1b
Spt-Mir-130-P1b
Tgu-Mir-130-P1b
Xla-Mir-130-P1b3
Xla-Mir-130-P1b4
Xtr-Mir-130-P1b
|
Node of Origin (locus) |
Gnathostomata
|
Node of Origin (family) |
Vertebrata
|
Genome context (GCA_003427355_STO_add) |
BFAA01005977.1: 163281-163343 [+]
|
Precursor (pre-Mir +30nt flank) |
AACCUGAUGCCGUUUGUCCGUUCGUCCAGUGCCCUUUUUAUGUUGUACUACUAGUGAUAACAGAAAAAAAGCAGUGCAAUAUUAAAAGGGCAUUGGCUGGCGACCAAGCCAAUGUUGCAGAUU
Get precursor sequence
|
Structure | 10 20 30 40 50 60
AACCUGAUGCCGUUUGUC---| UC U U A AGUGAUAA
CGU G CCAGUGCCCUUUU AUGUUGUACU CU \
GCG C GGUUACGGGAAAA UAUAACGUGA GA C
UUAGACGUUGUAACCGAACCA^ GU - U C AAAAAAGA
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | No |
Tissue expression
|
|
Star sequence |
Sto-Mir-130-P1b_5p* |
mirBase accession | None |
Sequence |
0- GCCCUUUUUAUGUUGUACUACU -22
Get sequence
|
Mature sequence |
Sto-Mir-130-P1b_3p |
mirBase accession | None |
Sequence |
41- CAGUGCAAUAUUAAAAGGGCAU -63
Get sequence
|