MirGeneDB 3.0
MirGeneDB ID

Cpi-Mir-130-P1b

Family name MIR-130 (all species)
Seed AGUGCAA
Species Western painted turtle (Chrysemys picta bellii)
MiRBase ID cpi-mir-130d
Paralogues Cpi-Mir-130-P1a  Cpi-Mir-130-P1c  Cpi-Mir-130-P2a  Cpi-Mir-130-P2b  Cpi-Mir-130-P3a  Cpi-Mir-130-P4a 
Orthologues Aca-Mir-130-P1b  Ami-Mir-130-P1b  Cli-Mir-130-P1b  Cmi-Mir-130-P1b  Dre-Mir-130-P1b1  Gga-Mir-130-P1b  Gja-Mir-130-P1b  Lch-Mir-130-P1b  Loc-Mir-130-P1b  Mdo-Mir-130-P1b  Mun-Mir-130-P1b  Oan-Mir-130-P1b  Pbv-Mir-130-P1b  Sha-Mir-130-P1b  Spt-Mir-130-P1b  Sto-Mir-130-P1b  Tgu-Mir-130-P1b  Xla-Mir-130-P1b3  Xla-Mir-130-P1b4  Xtr-Mir-130-P1b 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(chrPic1)		 JH584693: 261250-261312 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-130-P1b)		 Mir-130-P2b JH584693: 260023-260084 [-] UCSC Ensembl
Mir-130-P1b JH584693: 261250-261312 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UUACUUCCUGGUGAGUGGUGUCUGUCCAGUGCCCUUUUUAUGUUGUACUACUAGUGAUCAUACACAAAAAGCAGUGCAAUGUUAAAAGGGCAUUGGCCAGUGAUACUGUCCACGUUAGUUAAU
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Structure
        10        20          30        40        50        60 
UUACUUCCUGGUGAGUGGUGU--|  U             U          A  AGUGAUCA 
                       CUG CCAGUGCCCUUUU AUGUUGUACU CU        \
                       GAC GGUUACGGGAAAA UGUAACGUGA GA        U
UAAUUGAUUGCACCUGUCAUAGU^  C             U          C  AAAACACA 
 120       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Te Te Te To
Star sequence

Cpi-Mir-130-P1b_5p*
mirBase accessionNone
Sequence 
0- GCCCUUUUUAUGUUGUACUACU -22
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Mature sequence

Cpi-Mir-130-P1b_3p
mirBase accessionMIMAT0037747
Sequence 
41- CAGUGCAAUGUUAAAAGGGCAU -63
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