MirGeneDB 3.0
MirGeneDB ID

Sha-Mir-130-P1b

Family name MIR-130 (all species)
Seed AGUGCAA
Species Tasmanian devil (Sarcophilus harrisii)
MiRBase ID sha-mir-130b
Paralogues Sha-Mir-130-P1a  Sha-Mir-130-P1c  Sha-Mir-130-P2b  Sha-Mir-130-P3b  Sha-Mir-130-P4a 
Orthologues Aca-Mir-130-P1b  Ami-Mir-130-P1b  Cli-Mir-130-P1b  Cmi-Mir-130-P1b  Cpi-Mir-130-P1b  Dre-Mir-130-P1b1  Gga-Mir-130-P1b  Gja-Mir-130-P1b  Lch-Mir-130-P1b  Loc-Mir-130-P1b  Mdo-Mir-130-P1b  Mun-Mir-130-P1b  Oan-Mir-130-P1b  Pbv-Mir-130-P1b  Spt-Mir-130-P1b  Sto-Mir-130-P1b  Tgu-Mir-130-P1b  Xla-Mir-130-P1b3  Xla-Mir-130-P1b4  Xtr-Mir-130-P1b 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(DEVIL_add)		 GL856812.1: 2852996-2853058 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-130-P1b)		 Mir-130-P1b GL856812.1: 2852996-2853058 [+] UCSC Ensembl
Mir-130-P3b GL856812.1: 2872514-2872578 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AUCUUAUUGACUGAGUGGUAUUUGUCUAGUGCCCUUUUUAUGUUGUACUACUAGUGAUCCUGCACAAGAAGCAGUGCAAUGUUAAAAGGGCAUUGGCCAGUGAUACCGGUCACAUUUCUGGGC
Get precursor sequence
Structure
        10        20          30        40        50        60 
AUCUUAUUGACUGAGUGGUAU--|  U             U          A  AGUGAUCC 
                       UUG CUAGUGCCCUUUU AUGUUGUACU CU        \
                       GAC GGUUACGGGAAAA UGUAACGUGA GA        U
CGGGUCUUUACACUGGCCAUAGU^  C             U          C  AGAACACG 
 120       110       100        90        80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsNo
Tissue expression
-   +
Bo Br He Ki Li Ly Pa Sk Sp Te
Star sequence

Sha-Mir-130-P1b_5p*
mirBase accessionNone
Sequence 
0- GCCCUUUUUAUGUUGUACUACU -22
Get sequence
Mature sequence

Sha-Mir-130-P1b_3p
mirBase accessionMIMAT0022814
Sequence 
41- CAGUGCAAUGUUAAAAGGGCAU -63
Get sequence