MirGeneDB 3.0

MirGeneDB ID

Sha-Mir-130-P1a

Family name MIR-130 (all species)
Seed AGUGCAA
Species Tasmanian devil (Sarcophilus harrisii)
MiRBase ID
Paralogues Sha-Mir-130-P1b  Sha-Mir-130-P1c  Sha-Mir-130-P2b  Sha-Mir-130-P3b  Sha-Mir-130-P4a 
Orthologues Aca-Mir-130-P1a  Ami-Mir-130-P1a  Cli-Mir-130-P1a  Cmi-Mir-130-P1a  Cpi-Mir-130-P1a  Dre-Mir-130-P1a1  Dre-Mir-130-P1a2  Gga-Mir-130-P1a  Gja-Mir-130-P1a  Gmo-Mir-130-P1a1  Gmo-Mir-130-P1a2  Lch-Mir-130-P1a  Loc-Mir-130-P1a  Mal-Mir-130-P1a1  Mal-Mir-130-P1a2  Mdo-Mir-130-P1a  Mun-Mir-130-P1a  Oan-Mir-130-P1a  Pbv-Mir-130-P1a  Spt-Mir-130-P1a  Sto-Mir-130-P1a  Tgu-Mir-130-P1a  Tni-Mir-130-P1a2  Xla-Mir-130-P1a3  Xla-Mir-130-P1a4  Xtr-Mir-130-P1a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(DEVIL_add)
Mir-130-P1b>1: 104-161 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GGGAGCCGGACCCCACUGCUGGUGGCCGCGGCCCUUUUCUUGUUGCCCUGCUGAGCCGCAGAGGGGCAGUGCAAUGUUAAAAGGGCAUCGGCCGCCAGCGCCAGCUUCGGAAGGACGC
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Structure
        10          20        30        40        50        
GGGAGCCGGACCCCACU--|          CG        CU      C     GAGCC 
                   GCUGGUGGCCG  GCCCUUUU  UGUUGC CUGCU     G
                   CGACCGCCGGC  CGGGAAAA  GUAACG GACGG     C
CGCAGGAAGGCUUCGACCG^          UA        UU      U     GGAGA 
      110       100        90        80        70        60
Deep sequencing
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3' NTU Yes
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
 +
Bo Br He Ki Li Ly Pa Sk Sp Te
Star sequence

Sha-Mir-130-P1a_5p*

mirBase accessionNone
Sequence
0- GCCCUUUUCUUGUUGCCCUGCU -22
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Mature sequence

Sha-Mir-130-P1a_3p

mirBase accessionNone
Sequence
36- CAGUGCAAUGUUAAAAGGGCAU -58
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