MirGeneDB 3.0
MirGeneDB ID

Mal-Mir-130-P1a1

Family name MIR-130 (all species)
Seed AGUGCAA
Species Asian swamp eel (Monopterus albus)
MiRBase ID
Paralogues Mal-Mir-130-P1a2  Mal-Mir-130-P2a1  Mal-Mir-130-P2a2  Mal-Mir-130-P2b2  Mal-Mir-130-P3a1  Mal-Mir-130-P4a1 
Orthologues Aca-Mir-130-P1a  Ami-Mir-130-P1a  Cli-Mir-130-P1a  Cmi-Mir-130-P1a  Cpi-Mir-130-P1a  Dre-Mir-130-P1a1  Gga-Mir-130-P1a  Gja-Mir-130-P1a  Gmo-Mir-130-P1a1  Lch-Mir-130-P1a  Loc-Mir-130-P1a  Mdo-Mir-130-P1a  Mun-Mir-130-P1a  Oan-Mir-130-P1a  Pbv-Mir-130-P1a  Sha-Mir-130-P1a  Spt-Mir-130-P1a  Sto-Mir-130-P1a  Tgu-Mir-130-P1a  Xtr-Mir-130-P1a 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Vertebrata
Genome context
(GCA_001952655.1_M_albus_1.0_genomic)		 KV884728.1: 4817202-4817260 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CGGAUGUGAGGAACAGACAUGUUGUCCAAGGCUCUUUUUCUGUUGUACUACUGUGAAAUCAGAUGAGCAGUGCAAUAUUAAAAGGGCAUUGGCUGACAACCCCCCAAACCCUGCCCCCA
Get precursor sequence
Structure
        10          20        30        40        50         
CGGAUGUGAGGAACAGACA--|    U    G        UC         A  GUGAAA 
                     UGUUG CCAA GCUCUUUU  UGUUGUACU CU      \
                     ACAGU GGUU CGGGAAAA  AUAACGUGA GA      U
ACCCCCGUCCCAAACCCCCCA^    C    A        UU         C  GUAGAC 
       110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUGUG in loop
Tissue expression
-   +
Fe Fe In Ma Ma
Star sequence

Mal-Mir-130-P1a1_5p*
mirBase accessionNone
Sequence 
0- GCUCUUUUUCUGUUGUACUACU -22
Get sequence
Mature sequence

Mal-Mir-130-P1a1_3p
mirBase accessionNone
Sequence 
37- CAGUGCAAUAUUAAAAGGGCAU -59
Get sequence