MirGeneDB 2.1

MirGeneDB ID

Xtr-Mir-130-P1a

Family name MIR-130 (all species)
Seed AGUGCAA
Species Tropical clawed frog (Xenopus tropicalis)
MiRBase ID xtr-mir-130c
Paralogues Xtr-Mir-130-P1b  Xtr-Mir-130-P2a  Xtr-Mir-130-P2b  Xtr-Mir-130-P3a  Xtr-Mir-130-P4a 
Orthologues Aca-Mir-130-P1a  Ami-Mir-130-P1a  Cli-Mir-130-P1a  Cmi-Mir-130-P1a  Cpi-Mir-130-P1a  Dre-Mir-130-P1a1  Dre-Mir-130-P1a2  Gga-Mir-130-P1a  Gja-Mir-130-P1a  Gmo-Mir-130-P1a1  Gmo-Mir-130-P1a2  Lch-Mir-130-P1a  Loc-Mir-130-P1a  Mal-Mir-130-P1a1  Mal-Mir-130-P1a2  Mdo-Mir-130-P1a  Mun-Mir-130-P1a  Oan-Mir-130-P1a  Pbv-Mir-130-P1a  Sha-Mir-130-P1a  Spt-Mir-130-P1a  Sto-Mir-130-P1a  Tgu-Mir-130-P1a  Tni-Mir-130-P1a2  Xla-Mir-130-P1a3  Xla-Mir-130-P1a4 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(xenTro9_add)
chr1: 145403558-145403616 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-130-P1a)
Mir-130-P4a chr1: 145394714-145394773 [-] UCSC Ensembl
Mir-130-P2a chr1: 145402713-145402775 [-] UCSC Ensembl
Mir-130-P1a chr1: 145403558-145403616 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UGUGGAAAGACGUGGAACCUGUUAUCCGUGGCCCUUUUUCUGUUGUACUACUGGAAUUUGUAAUUAGCAGUGCAAUAUUAAAAGGGCAUUGGCUGACAGAACCCUAACACAACUUAAUA
Get precursor sequence
Structure
        10          20        30        40        50         
UGUGGAAAGACGUGGAAC--|     U   UG        UC         A  GGAAUU 
                    CUGUUA CCG  GCCCUUUU  UGUUGUACU CU      \
                    GACAGU GGU  CGGGAAAA  AUAACGUGA GA      U
AUAAUUCAACACAAUCCCAA^     C   UA        UU         C  UUAAUG 
       110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsNo
Tissue expression
 +
Br Em Em Em Em He
Star sequence

Xtr-Mir-130-P1a_5p*

mirBase accessionNone
Sequence
0- GCCCUUUUUCUGUUGUACUACU -22
Get sequence
Mature sequence

Xtr-Mir-130-P1a_3p

mirBase accessionMIMAT0003592
Sequence
37- CAGUGCAAUAUUAAAAGGGCAU -59
Get sequence
Proposed targets TargetScanVert: xtr-miR-130c