Mir-130-P3a

MirGeneDB ID

Xtr-Mir-130-P3a

Family name

MIR-130 (all species)

Seed

AGUGCAA

Species

Tropical clawed frog (Xenopus tropicalis)

MiRBase ID

Paralogues

Xtr-Mir-130-P1a Xtr-Mir-130-P1b Xtr-Mir-130-P2a Xtr-Mir-130-P2b Xtr-Mir-130-P4a

Orthologues

Aca-Mir-130-P3a Ami-Mir-130-P3a Cli-Mir-130-P3a Cmi-Mir-130-P3a Cpi-Mir-130-P3a Dre-Mir-130-P3a1 Gga-Mir-130-P3a Gja-Mir-130-P3a Lch-Mir-130-P3a Loc-Mir-130-P3a Mal-Mir-130-P3a1 Mun-Mir-130-P3a Pbv-Mir-130-P3a Spt-Mir-130-P3a Sto-Mir-130-P3a Tgu-Mir-130-P3a Xla-Mir-130-P3a3 Xla-Mir-130-P3a4

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(xenTro9_add)

chr1: 145396854-145396917 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-130-P3a)

Mir-130-P4a chr1: 145394714-145394773 [-] UCSC Ensembl
Mir-130-P2a chr1: 145402713-145402775 [-] UCSC Ensembl
Mir-130-P1a chr1: 145403558-145403616 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GGUUCCAGUGCCCUCAGCCUUAAGGAAGUGACCCUAUCAAUAUUGCCUCUGCUUUUGUGCUCGGAGUAGUAGUGCAAUAUUGCUUAUAGGGUCUUUUCCUUGAGACACCUUCUUUUUCCAACAA

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Structure

        10          20        30           40        50        60
GGUUCCAGUGCCCUCAGC--          U        ---|        CU     UUUGUG 
                    CUUAAGGAAG GACCCUAU   CAAUAUUGC  CUGCU      C
                    GAGUUCCUUU CUGGGAUA   GUUAUAACG  GAUGA      U
AACAACCUUUUUCUUCCACA          U        UUC^        U-     UGAGGC 
  120       110       100        90        80         70

Deep sequencing

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3' NTU

Motifs

Tissue expression

An	Br	Em	Em	He	Ve

Star sequence

Xtr-Mir-130-P3a_5p*

mirBase accession

None

Sequence

0- ACCCUAUCAAUAUUGCCUCUGCU -23

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Mature sequence

Xtr-Mir-130-P3a_3p

mirBase accession

None

Sequence

39- UAGUGCAAUAUUGCUUAUAGGGUCU -64

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