MirGeneDB 3.0

MirGeneDB ID

Gga-Mir-130-P3a

Family name MIR-130 (all species)
Seed AGUGCAA
Species Chicken (Gallus gallus)
MiRBase ID gga-mir-454
Paralogues Gga-Mir-130-P1a  Gga-Mir-130-P1b  Gga-Mir-130-P2a  Gga-Mir-130-P2b  Gga-Mir-130-P4a 
Orthologues Aca-Mir-130-P3a  Ami-Mir-130-P3a  Cli-Mir-130-P3a  Cmi-Mir-130-P3a  Cpi-Mir-130-P3a  Dre-Mir-130-P3a1  Gja-Mir-130-P3a  Lch-Mir-130-P3a  Loc-Mir-130-P3a  Mal-Mir-130-P3a1  Mun-Mir-130-P3a  Pbv-Mir-130-P3a  Spt-Mir-130-P3a  Sto-Mir-130-P3a  Tgu-Mir-130-P3a  Xla-Mir-130-P3a3  Xla-Mir-130-P3a4  Xtr-Mir-130-P3a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(Gallus_gallus.GRCg6a)
15: 695881-695944 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-130-P3a)
Mir-130-P4a 15: 694747-694807 [-] UCSC Ensembl
Mir-130-P3a 15: 695881-695944 [-] UCSC Ensembl
Mir-130-P2a 15: 702346-702408 [-] UCSC Ensembl
Mir-130-P1a 15: 703569-703627 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AUUAUCCAGCUUCCUAACCUUAAGGAUGAGACCCUAUCAAUAUUGCCUCUGCUUUUGUGCUCAGGGUAGUAGUGCAAUAUUGCUUAUAGGGUCUUUUCUUUUGAGGGUAUUCUUCAUGGAGAGA
Get precursor sequence
Structure
        10         20         30           40        50        60
AUUAUCCAGCUUCCUAA-    -     U          ---|        CU     UUUGUG 
                  CCUU AAGGA GAGACCCUAU   CAAUAUUGC  CUGCU      C
                  GGAG UUUCU UUCUGGGAUA   GUUAUAACG  GAUGA      U
AGAGAGGUACUUCUUAUG    U     U          UUC^        U-     UGGGAC 
  120       110       100        90        80         70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Ad Ad Ad Br Br Ce Ce Ce Ce Gg He He Hy Hy Ki Ki Li Li Lu Lu Ov Pr Pr Sc Sc Sp Sp Te
Star sequence

Gga-Mir-130-P3a_5p*

mirBase accessionMIMAT0007291
Sequence
0- ACCCUAUCAAUAUUGCCUCUGCU -23
Get sequence
Proposed targets TargetScanVert: gga-miR-454-5p
miRDB: MIMAT0007291
Mature sequence

Gga-Mir-130-P3a_3p

mirBase accessionMIMAT0007292
Sequence
39- UAGUGCAAUAUUGCUUAUAGGGUCU -64
Get sequence
Proposed targets TargetScanVert: gga-miR-454-3p
miRDB: MIMAT0007292