Mir-130-P2b

MirGeneDB ID

Gga-Mir-130-P2b

Family name

MIR-130 (all species)

Seed

AGUGCAA

Species

Chicken (Gallus gallus)

MiRBase ID

gga-mir-301b

Paralogues

Gga-Mir-130-P1a Gga-Mir-130-P1b Gga-Mir-130-P2a Gga-Mir-130-P3a Gga-Mir-130-P4a

Orthologues

Aca-Mir-130-P2b Ami-Mir-130-P2b Bta-Mir-130-P2b Cfa-Mir-130-P2b Cja-Mir-130-P2b Cli-Mir-130-P2b Cmi-Mir-130-P2b Cpi-Mir-130-P2b Cpo-Mir-130-P2b Dno-Mir-130-P2b Dre-Mir-130-P2b1 Eca-Mir-130-P2b Ete-Mir-130-P2b Gja-Mir-130-P2b Gmo-Mir-130-P2b1 Hsa-Mir-130-P2b Laf-Mir-130-P2b Lch-Mir-130-P2b Loc-Mir-130-P2b Mal-Mir-130-P2b2 Mdo-Mir-130-P2b Mml-Mir-130-P2b Mmr-Mir-130-P2b Mmu-Mir-130-P2b Mun-Mir-130-P2b Oan-Mir-130-P2b Ocu-Mir-130-P2b Pab-Mir-130-P2b Pbv-Mir-130-P2b Rno-Mir-130-P2b Sha-Mir-130-P2b Spt-Mir-130-P2b Sto-Mir-130-P2b Tgu-Mir-130-P2b Xla-Mir-130-P2b3 Xla-Mir-130-P2b4 Xtr-Mir-130-P2b

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(Gallus_gallus.GRCg6a)

19: 7339868-7339929 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-130-P2b)

Mir-130-P2b 19: 7339868-7339929 [-] UCSC Ensembl
Mir-130-P1b 19: 7340157-7340217 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GCUUGUUGAGAAUUGUUGCUGCUAACGAAUGCUCUGACUUUAUUGCACUACUGUACUUCACAGCUAGCAGUGCAAUAGUAUUGUCAAAGCAUCUGAAAGCAGAGCGUGCAGCGAUGGCGUGC

Get precursor sequence

Structure

        10          20        30           40        50         
GCUUGUUGAGAAUUGUUG--     AA  A     C    U---|         A  GUACUU 
                    CUGCU  CG AUGCU UGAC    UUAUUGCACU CU      \
                    GACGA  GU UACGA ACUG    GAUAACGUGA GA      C
CGUGCGGUAGCGACGUGCGA     AA  C     A    UUAU^         C  UCGACA 
120       110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Ad	Ad	Ad	Br	Br	Ce	Ce	Ce	Ce	Gg	He	He	Hy	Hy	Ki	Ki	Li	Li	Lu	Lu	Ov	Pr	Pr	Sc	Sc	Sp	Sp	Te

Star sequence

Gga-Mir-130-P2b_5p*

mirBase accession

MIMAT0007741

Sequence

0- GCUCUGACUUUAUUGCACUACU -22

Get sequence

Proposed targets

TargetScanVert: gga-miR-301b-5p
miRDB: MIMAT0007741

Mature sequence

Gga-Mir-130-P2b_3p

mirBase accession

MIMAT0007742

Sequence

37- CAGUGCAAUAGUAUUGUCAAAGCAU -62

Get sequence

Proposed targets

TargetScanVert: gga-miR-301b-3p
miRDB: MIMAT0007742