Mir-130-P2b

MirGeneDB ID

Cja-Mir-130-P2b

Family name

MIR-130 (all species)

Seed

AGUGCAA

Species

White-tufted-ear marmoset (Callithrix jacchus)

MiRBase ID

Paralogues

Cja-Mir-130-P1c Cja-Mir-130-P2a Cja-Mir-130-P3b Cja-Mir-130-P4a

Orthologues

Aca-Mir-130-P2b Ami-Mir-130-P2b Bta-Mir-130-P2b Cfa-Mir-130-P2b Cli-Mir-130-P2b Cmi-Mir-130-P2b Cpi-Mir-130-P2b Cpo-Mir-130-P2b Dno-Mir-130-P2b Dre-Mir-130-P2b1 Eca-Mir-130-P2b Ete-Mir-130-P2b Gga-Mir-130-P2b Gja-Mir-130-P2b Gmo-Mir-130-P2b1 Hsa-Mir-130-P2b Laf-Mir-130-P2b Lch-Mir-130-P2b Loc-Mir-130-P2b Mal-Mir-130-P2b2 Mdo-Mir-130-P2b Mml-Mir-130-P2b Mmr-Mir-130-P2b Mmu-Mir-130-P2b Mun-Mir-130-P2b Oan-Mir-130-P2b Ocu-Mir-130-P2b Pab-Mir-130-P2b Pbv-Mir-130-P2b Rno-Mir-130-P2b Sha-Mir-130-P2b Spt-Mir-130-P2b Sto-Mir-130-P2b Tgu-Mir-130-P2b Xla-Mir-130-P2b3 Xla-Mir-130-P2b4 Xtr-Mir-130-P2b

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(GCA_011100555.2_mCalJa1.2.pat.X_genomic)

CM021919.1: 89832292-89832353 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UUUCUUUCCUACUUAUUACUGCUAACGAAUGCUCUGACUUUAUUGCACUACUGUACUUUACAGCUAGCAGUGCAAUAGUAUUGUCAAAGCAUCUGAAAGCAGGAUGCACAUCAGAAUUUUGA

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Structure

        10          20        30           40        50         
UUUCUUUCCUACUUAUUA--     AA  A     C    U---|         A  GUACUU 
                    CUGCU  CG AUGCU UGAC    UUAUUGCACU CU      \
                    GACGA  GU UACGA ACUG    GAUAACGUGA GA      U
AGUUUUAAGACUACACGUAG     AA  C     A    UUAU^         C  UCGACA 
120       110       100        90        80        70        60

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

To

Star sequence

Cja-Mir-130-P2b_5p*

mirBase accession

None

Sequence

0- GCUCUGACUUUAUUGCACUACU -22

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Mature sequence

Cja-Mir-130-P2b_3p

mirBase accession

None

Sequence

37- CAGUGCAAUAGUAUUGUCAAAGCAU -62

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