MirGeneDB 2.1
MirGeneDB ID

Cpo-Mir-130-P2b

Family name MIR-130 (all species)
Seed AGUGCAA
Species Guinea pig (Cavia porcellus)
MiRBase ID cpo-mir-301a
Paralogues Cpo-Mir-130-P1c  Cpo-Mir-130-P2a  Cpo-Mir-130-P3b  Cpo-Mir-130-P4a 
Orthologues Aca-Mir-130-P2b  Ami-Mir-130-P2b  Bta-Mir-130-P2b  Cfa-Mir-130-P2b  Cli-Mir-130-P2b  Cmi-Mir-130-P2b  Cpi-Mir-130-P2b  Dno-Mir-130-P2b  Dre-Mir-130-P2b1  Ete-Mir-130-P2b  Gga-Mir-130-P2b  Gja-Mir-130-P2b  Gmo-Mir-130-P2b1  Hsa-Mir-130-P2b  Lch-Mir-130-P2b  Loc-Mir-130-P2b  Mal-Mir-130-P2b2  Mdo-Mir-130-P2b  Mml-Mir-130-P2b  Mmu-Mir-130-P2b  Mun-Mir-130-P2b  Oan-Mir-130-P2b  Ocu-Mir-130-P2b  Pbv-Mir-130-P2b  Rno-Mir-130-P2b  Sha-Mir-130-P2b  Spt-Mir-130-P2b  Sto-Mir-130-P2b  Tgu-Mir-130-P2b  Xla-Mir-130-P2b3  Xla-Mir-130-P2b4  Xtr-Mir-130-P2b 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(cavPor3)		 scaffold_32: 7094160-7094221 [-] UCSC
Clustered miRNAs
(< 50kb from Mir-130-P2b)		 Mir-130-P3b scaffold_32: 7083450-7083514 [-] UCSC
Mir-130-P2b scaffold_32: 7094160-7094221 [-] UCSC
Precursor
(pre-Mir +30nt flank)
UUCCUUUUCUACUUAUUACUGCUAACGAAUGCUCUGACUUUAUUGCACUACUGUACUUUACAGCUAGCAGUGCAAUAGUAUUGUCAAAGCAUCUGAAAGCAGGGUACACGUCAGAAUUUUUU
Get precursor sequence
Structure
        10          20        30           40        50         
UUCCUUUUCUACUUAUUA--     AA  A     C    U---|         A  GUACUU 
                    CUGCU  CG AUGCU UGAC    UUAUUGCACU CU      \
                    GACGA  GU UACGA ACUG    GAUAACGUGA GA      U
UUUUUUAAGACUGCACAUGG     AA  C     A    UUAU^         C  UCGACA 
120       110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
To
Star sequence

Cpo-Mir-130-P2b_5p*
mirBase accessionMIMAT0047142
Sequence 
0- GCUCUGACUUUAUUGCACUACU -22
Get sequence
Mature sequence

Cpo-Mir-130-P2b_3p
mirBase accessionMIMAT0047143
Sequence 
37- CAGUGCAAUAGUAUUGUCAAAGCAU -62
Get sequence