Mir-130-P2b

MirGeneDB ID

Loc-Mir-130-P2b

Family name

MIR-130 (all species)

Seed

AGUGCAA

Species

Spotted gar (Lepisosteus oculatus)

MiRBase ID

Paralogues

Loc-Mir-130-P1a Loc-Mir-130-P1b Loc-Mir-130-P2a Loc-Mir-130-P3a Loc-Mir-130-P4a

Orthologues

Aca-Mir-130-P2b Ami-Mir-130-P2b Bta-Mir-130-P2b Cfa-Mir-130-P2b Cja-Mir-130-P2b Cli-Mir-130-P2b Cmi-Mir-130-P2b Cpi-Mir-130-P2b Cpo-Mir-130-P2b Dno-Mir-130-P2b Dre-Mir-130-P2b1 Eca-Mir-130-P2b Ete-Mir-130-P2b Gga-Mir-130-P2b Gja-Mir-130-P2b Gmo-Mir-130-P2b1 Hsa-Mir-130-P2b Laf-Mir-130-P2b Lch-Mir-130-P2b Mal-Mir-130-P2b2 Mdo-Mir-130-P2b Mml-Mir-130-P2b Mmr-Mir-130-P2b Mmu-Mir-130-P2b Mun-Mir-130-P2b Oan-Mir-130-P2b Ocu-Mir-130-P2b Pab-Mir-130-P2b Pbv-Mir-130-P2b Rno-Mir-130-P2b Sha-Mir-130-P2b Spt-Mir-130-P2b Sto-Mir-130-P2b Tgu-Mir-130-P2b Xla-Mir-130-P2b3 Xla-Mir-130-P2b4 Xtr-Mir-130-P2b

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(LepOcu1)

LG22: 410146-410207 [+] Ensembl

Precursor
(pre-Mir +30nt flank)

GAGGGAGAGGCAGGCGAGCUGCUGGCAGCUGCUCUGACUUUAUUGCACUACUGUAGUUGACAGCUAGCAGUGCAAUAGUAUUGUCAAAGCGUCUGAGGGCAGCCGAGCACCGGUCAUCGCAG

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Structure

        10          20        30           40        50         
GAGGGAGAGGCAGGCGA--      GG   C    C    U---|         A  GUAGUU 
                   GCUGCU  CAG UGCU UGAC    UUAUUGCACU CU      \
                   CGACGG  GUC GCGA ACUG    GAUAACGUGA GA      G
GACGCUACUGGCCACGAGC      GA   U    A    UUAU^         C  UCGACA 
120       110       100        90        80        70        60

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Br	Br	He	He	He	He	Ov	Ov	Ov	Ov	Te	Te	Te	Te	To

Star sequence

Loc-Mir-130-P2b_5p*

mirBase accession

None

Sequence

0- GCUCUGACUUUAUUGCACUACU -22

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Mature sequence

Loc-Mir-130-P2b_3p

mirBase accession

None

Sequence

37- CAGUGCAAUAGUAUUGUCAAAGCGU -62

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