MirGeneDB 2.1
MirGeneDB ID

Loc-Mir-130-P2b

Family name MIR-130 (all species)
Seed AGUGCAA
Species Spotted gar (Lepisosteus oculatus)
MiRBase ID
Paralogues Loc-Mir-130-P1a  Loc-Mir-130-P1b  Loc-Mir-130-P2a  Loc-Mir-130-P3a  Loc-Mir-130-P4a 
Orthologues Aca-Mir-130-P2b  Ami-Mir-130-P2b  Bta-Mir-130-P2b  Cfa-Mir-130-P2b  Cli-Mir-130-P2b  Cmi-Mir-130-P2b  Cpi-Mir-130-P2b  Cpo-Mir-130-P2b  Dno-Mir-130-P2b  Dre-Mir-130-P2b1  Ete-Mir-130-P2b  Gga-Mir-130-P2b  Gja-Mir-130-P2b  Gmo-Mir-130-P2b1  Hsa-Mir-130-P2b  Lch-Mir-130-P2b  Mal-Mir-130-P2b2  Mdo-Mir-130-P2b  Mml-Mir-130-P2b  Mmu-Mir-130-P2b  Mun-Mir-130-P2b  Oan-Mir-130-P2b  Ocu-Mir-130-P2b  Pbv-Mir-130-P2b  Rno-Mir-130-P2b  Sha-Mir-130-P2b  Spt-Mir-130-P2b  Sto-Mir-130-P2b  Tgu-Mir-130-P2b  Xla-Mir-130-P2b3  Xla-Mir-130-P2b4  Xtr-Mir-130-P2b 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(LepOcu1)		 LG22: 410146-410207 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
GAGGGAGAGGCAGGCGAGCUGCUGGCAGCUGCUCUGACUUUAUUGCACUACUGUAGUUGACAGCUAGCAGUGCAAUAGUAUUGUCAAAGCGUCUGAGGGCAGCCGAGCACCGGUCAUCGCAG
Get precursor sequence
Structure
        10          20        30           40        50         
GAGGGAGAGGCAGGCGA--      GG   C    C    U---|         A  GUAGUU 
                   GCUGCU  CAG UGCU UGAC    UUAUUGCACU CU      \
                   CGACGG  GUC GCGA ACUG    GAUAACGUGA GA      G
GACGCUACUGGCCACGAGC      GA   U    A    UUAU^         C  UCGACA 
120       110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Br Br He He He He Ov Ov Ov Ov Te Te Te Te To
Star sequence

Loc-Mir-130-P2b_5p*
mirBase accessionNone
Sequence 
0- GCUCUGACUUUAUUGCACUACU -22
Get sequence
Mature sequence

Loc-Mir-130-P2b_3p
mirBase accessionNone
Sequence 
37- CAGUGCAAUAGUAUUGUCAAAGCGU -62
Get sequence