MirGeneDB ID | Mun-Mir-130-P2b |
Family name |
MIR-130 (all species) |
Seed |
AGUGCAA |
Species |
Microcaecilia (Microcaecilia unicolor) |
MiRBase ID |
|
Paralogues |
Mun-Mir-130-P1a
Mun-Mir-130-P1b
Mun-Mir-130-P1c
Mun-Mir-130-P2a
Mun-Mir-130-P3a
Mun-Mir-130-P4a
|
Orthologues |
Aca-Mir-130-P2b
Ami-Mir-130-P2b
Bta-Mir-130-P2b
Cfa-Mir-130-P2b
Cja-Mir-130-P2b
Cli-Mir-130-P2b
Cmi-Mir-130-P2b
Cpi-Mir-130-P2b
Cpo-Mir-130-P2b
Dno-Mir-130-P2b
Dre-Mir-130-P2b1
Eca-Mir-130-P2b
Ete-Mir-130-P2b
Gga-Mir-130-P2b
Gja-Mir-130-P2b
Gmo-Mir-130-P2b1
Hsa-Mir-130-P2b
Laf-Mir-130-P2b
Lch-Mir-130-P2b
Loc-Mir-130-P2b
Mal-Mir-130-P2b2
Mdo-Mir-130-P2b
Mml-Mir-130-P2b
Mmr-Mir-130-P2b
Mmu-Mir-130-P2b
Oan-Mir-130-P2b
Ocu-Mir-130-P2b
Pab-Mir-130-P2b
Pbv-Mir-130-P2b
Rno-Mir-130-P2b
Sha-Mir-130-P2b
Spt-Mir-130-P2b
Sto-Mir-130-P2b
Tgu-Mir-130-P2b
Xla-Mir-130-P2b3
Xla-Mir-130-P2b4
Xtr-Mir-130-P2b
|
Node of Origin (locus) |
Gnathostomata
|
Node of Origin (family) |
Vertebrata
|
Genome context (Mun_miRNA_loci) |
130-P2b_LR594644.1:50511068-50511325: 101-158 [+]
|
Precursor (pre-Mir +30nt flank) |
UUUAAUGGUGACUUUUCUGCUAACGAAUGCUCUGACUUUAUUGCACUACUGUACUUUACAGCUAGCAGUGCAAUAGUAAUGUCAAAGCAUCUGAAAGCAGAGCAUGCAGCAACAGUUC
Get precursor sequence
|
Structure | 10 20 30 40 50
UUUAAUGGUGACUUUUC-- AA A C U---| A GUACUU
UGCU CG AUGCU UGAC UUAUUGCACU CU \
ACGA GU UACGA ACUG GAUAACGUGA GA U
CUUGACAACGACGUACGAG AA C A UAAU^ C UCGACA
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | No |
Tissue expression
|
|
Star sequence |
Mun-Mir-130-P2b_5p* |
mirBase accession | None |
Sequence |
0- UCUGACUUUAUUGCACUACU -20
Get sequence
|
Mature sequence |
Mun-Mir-130-P2b_3p |
mirBase accession | None |
Sequence |
35- CAGUGCAAUAGUAAUGUCAAAGC -58
Get sequence
|