MirGeneDB 3.0

MirGeneDB ID

Mun-Mir-130-P3a

Family name MIR-130 (all species)
Seed AGUGCAA
Species Microcaecilia (Microcaecilia unicolor)
MiRBase ID
Paralogues Mun-Mir-130-P1a  Mun-Mir-130-P1b  Mun-Mir-130-P1c  Mun-Mir-130-P2a  Mun-Mir-130-P2b  Mun-Mir-130-P4a 
Orthologues Aca-Mir-130-P3a  Ami-Mir-130-P3a  Cli-Mir-130-P3a  Cmi-Mir-130-P3a  Cpi-Mir-130-P3a  Dre-Mir-130-P3a1  Gga-Mir-130-P3a  Gja-Mir-130-P3a  Lch-Mir-130-P3a  Loc-Mir-130-P3a  Mal-Mir-130-P3a1  Pbv-Mir-130-P3a  Spt-Mir-130-P3a  Sto-Mir-130-P3a  Tgu-Mir-130-P3a  Xla-Mir-130-P3a3  Xla-Mir-130-P3a4  Xtr-Mir-130-P3a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(Mun_miRNA_loci)
130-P3a_LR594642.1:57453590-57453853: 101-164 [+]
Precursor
(pre-Mir +30nt flank)
AGCCUGGGAAGCCCAGACCUUAAGGAAAAGGCCCUAUCAAUAUUGCCUCUGCUUUUAUGAUCAGAGAAGCAGUGCAAUAUUGCUUAUAGGGUCUUUUCUUGGGGAACUUUCACCAUGGAUAAAC
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Structure
        10           20        30           40        50        60
AGCCUGGGAAGCCCAGA---      G             ---|        CU     UUUAUG 
                    CCUUAA GAAAAGGCCCUAU   CAAUAUUGC  CUGCU      A
                    GGGGUU CUUUUCUGGGAUA   GUUAUAACG  GACGA      U
CAAAUAGGUACCACUUUCAA      -             UUC^        U-     AGAGAC 
  120       110       100         90        80         70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
To
Star sequence

Mun-Mir-130-P3a_5p* (predicted)

mirBase accessionNone
Sequence
0- GCCCUAUCAAUAUUGCCUCUGCU -23
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Mature sequence

Mun-Mir-130-P3a_3p

mirBase accessionNone
Sequence
39- CAGUGCAAUAUUGCUUAUAGGGUCU -64
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