Mir-130-P3a

MirGeneDB ID

Cli-Mir-130-P3a

Family name

MIR-130 (all species)

Seed

AGUGCAA

Species

Rock pigeon (Columba livia)

MiRBase ID

cli-mir-454

Paralogues

Cli-Mir-130-P1a Cli-Mir-130-P1b Cli-Mir-130-P2a Cli-Mir-130-P2b

Orthologues

Aca-Mir-130-P3a Ami-Mir-130-P3a Cmi-Mir-130-P3a Cpi-Mir-130-P3a Dre-Mir-130-P3a1 Gga-Mir-130-P3a Gja-Mir-130-P3a Lch-Mir-130-P3a Loc-Mir-130-P3a Mal-Mir-130-P3a1 Mun-Mir-130-P3a Pbv-Mir-130-P3a Spt-Mir-130-P3a Sto-Mir-130-P3a Tgu-Mir-130-P3a Xla-Mir-130-P3a3 Xla-Mir-130-P3a4 Xtr-Mir-130-P3a

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(colLiv2)

scaffold1320: 497731-497794 [-]

Clustered miRNAs
(< 50kb from Mir-130-P3a)

Mir-130-P3a scaffold1320: 497731-497794 [-]
Mir-130-P2a scaffold1320: 504219-504281 [-]
Mir-130-P1a scaffold1320: 505488-505546 [-]

Precursor
(pre-Mir +30nt flank)

AUUAUCCAGCUUCCUAACCUUAAGGAUGAGACCCUAUCAAUAUUGCCUCUGCUUUUGUGAUCAGGGUAGUAGUGCAAUAUUGCUUAUAGGGUCUUUUCUUUUGAGGGUUAUUCUUCAUGGAGAG

Get precursor sequence

Structure

        10         20         30           40        50        60
AUUAUCCAGCUUCCUAA-    -     U          ---|        CU     UUUGUG 
                  CCUU AAGGA GAGACCCUAU   CAAUAUUGC  CUGCU      A
                  GGAG UUUCU UUCUGGGAUA   GUUAUAACG  GAUGA      U
GAGAGGUACUUCUUAUUG    U     U          UUC^        U-     UGGGAC 
  120       110       100        90        80         70