Mir-130-P3a3

MirGeneDB ID

Xla-Mir-130-P3a3

Family name

MIR-130 (all species)

Seed

AGUGCAA

Species

African clawed frog (Xenopus laevis)

MiRBase ID

Paralogues

Xla-Mir-130-P1a3 Xla-Mir-130-P1a4 Xla-Mir-130-P1b3 Xla-Mir-130-P1b4 Xla-Mir-130-P2a3 Xla-Mir-130-P2a4 Xla-Mir-130-P2b3 Xla-Mir-130-P2b4 Xla-Mir-130-P3a4 Xla-Mir-130-P4a3 Xla-Mir-130-P4a4

Orthologues

Aca-Mir-130-P3a Ami-Mir-130-P3a Cli-Mir-130-P3a Cmi-Mir-130-P3a Cpi-Mir-130-P3a Gga-Mir-130-P3a Gja-Mir-130-P3a Lch-Mir-130-P3a Loc-Mir-130-P3a Mun-Mir-130-P3a Pbv-Mir-130-P3a Spt-Mir-130-P3a Sto-Mir-130-P3a Tgu-Mir-130-P3a Xtr-Mir-130-P3a

Node of Origin (locus)

X. laevis

Node of Origin (family)

Vertebrata

Genome context
(GCF_001663975.1_XLA_v2)

NC_030724.1: 153953774-153953837 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GGUGCCAAUGCCCACAGCUUUAAGGAAGAGACCCUAUCAAUAUUGCCUCUGCUUUUGUGCUCAGAGUAGUAGUGCAAUAUUGCUUAUAGGGUCUUUUCCUUGAGACAUCUUCUUUAUCCAGCAA

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Structure

        10          20        30           40        50        60
GGUGCCAAUGCCCACAGC--                   ---|        CU     UUUGUG 
                    UUUAAGGAAGAGACCCUAU   CAAUAUUGC  CUGCU      C
                    GAGUUCCUUUUCUGGGAUA   GUUAUAACG  GAUGA      U
AACGACCUAUUUCUUCUACA                   UUC^        U-     UGAGAC 
  120       110       100        90        80         70

Deep sequencing

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Comment

There is a second Drosha cut +1 on both arms.

3' NTU

Motifs

Tissue expression

Em

Star sequence

Xla-Mir-130-P3a3_5p*

mirBase accession

None

Sequence

0- ACCCUAUCAAUAUUGCCUCUGCU -23

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Mature sequence

Xla-Mir-130-P3a3_3p

mirBase accession

None

Sequence

39- UAGUGCAAUAUUGCUUAUAGGGUCU -64

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