MirGeneDB 2.1

MirGeneDB ID

Lch-Mir-130-P3a

Family name MIR-130 (all species)
Seed AGUGCAA
Species Coelacanth (Latimeria chalumnae)
MiRBase ID
Paralogues Lch-Mir-130-P1a  Lch-Mir-130-P1b  Lch-Mir-130-P1c  Lch-Mir-130-P1d  Lch-Mir-130-P2a  Lch-Mir-130-P2b  Lch-Mir-130-P2d  Lch-Mir-130-P3b  Lch-Mir-130-P3c  Lch-Mir-130-P4a 
Orthologues Aca-Mir-130-P3a  Ami-Mir-130-P3a  Cli-Mir-130-P3a  Cmi-Mir-130-P3a  Cpi-Mir-130-P3a  Dre-Mir-130-P3a1  Gga-Mir-130-P3a  Gja-Mir-130-P3a  Loc-Mir-130-P3a  Mal-Mir-130-P3a1  Mun-Mir-130-P3a  Pbv-Mir-130-P3a  Spt-Mir-130-P3a  Sto-Mir-130-P3a  Tgu-Mir-130-P3a  Xla-Mir-130-P3a3  Xla-Mir-130-P3a4  Xtr-Mir-130-P3a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(LatCha1_add)
JH126620.1: 795127-795190 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
GUGGCACUGCACUACAUCCUCAAAGAAAAGACCCUAUCAAUACUGCCUCUGCUUUUAGAAAUAGUGGAGUAGUGCAAUAUUGCUUAUAGGGUCUUGAAUUUGAGGGUCUACUUCGAACACCCGA
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Structure
        10          20        30           40        50        60
GUGGCACUGCACUACAU--       GAA          ---|    C   CU     UUUAGA 
                   CCUCAAA   AAGACCCUAU   CAAUA UGC  CUGCU      A
                   GGAGUUU   UUCUGGGAUA   GUUAU ACG  GAUGA      A
AGCCCACAAGCUUCAUCUG       AAG          UUC^    A   U-     GGUGAU 
  120       110       100        90        80         70
Deep sequencing
3' NTU Unknown
MotifsCNNC at 3p(+17)
Star sequence

Lch-Mir-130-P3a_5p* (predicted)

mirBase accessionNone
Sequence
0- ACCCUAUCAAUACUGCCUCUGCU -23
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Mature sequence

Lch-Mir-130-P3a_3p (predicted)

mirBase accessionNone
Sequence
39- UAGUGCAAUAUUGCUUAUAGGGUCU -64
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