MirGeneDB 3.0

MirGeneDB ID

Lch-Mir-130-P2d

Family name MIR-130 (all species)
Seed AGUGCAA
Species Coelacanth (Latimeria chalumnae)
MiRBase ID
Paralogues Lch-Mir-130-P1a  Lch-Mir-130-P1b  Lch-Mir-130-P1c  Lch-Mir-130-P1d  Lch-Mir-130-P2a  Lch-Mir-130-P2b  Lch-Mir-130-P3a  Lch-Mir-130-P3b  Lch-Mir-130-P3c  Lch-Mir-130-P4a 
Orthologues
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(LatCha1_add)
JH128272.1: 320519-320582 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
AACUGUAUAAAGUGUUUUCUGCCUGUGGCAGCUCUGACAGUAUUGCACUACUGUUCCUUCAGCAUCGAGCAGUGCAAUAGUAUUGUCAAAGCGUCCAAUGGCAGUCAGUCACGACGAAGGGGAU
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Structure
        10          20        30        40           50          
AACUGUAUAAAGUGUUUU--     UG   CA   C         ---|     A  GUUCCUU 
                    CUGCC  UGG  GCU UGACAGUAU   UGCACU CU       \
                    GACGG  ACC  CGA ACUGUUAUG   ACGUGA GA       C
UAGGGGAAGCAGCACUGACU     UA   UG   A         AUA^     C  GCUACGA 
  120       110       100        90        80        70
Deep sequencing
3' NTU Unknown
MotifsCNNC at 3p(+17)
Star sequence

Lch-Mir-130-P2d_5p* (predicted)

mirBase accessionNone
Sequence
0- GCUCUGACAGUAUUGCACUACU -22
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Mature sequence

Lch-Mir-130-P2d_3p (predicted)

mirBase accessionNone
Sequence
39- CAGUGCAAUAGUAUUGUCAAAGCGU -64
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