MirGeneDB 3.0

MirGeneDB ID

Lch-Mir-130-P1a

Family name MIR-130 (all species)
Seed AGUGCAA
Species Coelacanth (Latimeria chalumnae)
MiRBase ID
Paralogues Lch-Mir-130-P1b  Lch-Mir-130-P1c  Lch-Mir-130-P1d  Lch-Mir-130-P2a  Lch-Mir-130-P2b  Lch-Mir-130-P2d  Lch-Mir-130-P3a  Lch-Mir-130-P3b  Lch-Mir-130-P3c  Lch-Mir-130-P4a 
Orthologues Aca-Mir-130-P1a  Ami-Mir-130-P1a  Cli-Mir-130-P1a  Cmi-Mir-130-P1a  Cpi-Mir-130-P1a  Dre-Mir-130-P1a1  Dre-Mir-130-P1a2  Gga-Mir-130-P1a  Gja-Mir-130-P1a  Gmo-Mir-130-P1a1  Gmo-Mir-130-P1a2  Loc-Mir-130-P1a  Mal-Mir-130-P1a1  Mal-Mir-130-P1a2  Mdo-Mir-130-P1a  Mun-Mir-130-P1a  Oan-Mir-130-P1a  Pbv-Mir-130-P1a  Sha-Mir-130-P1a  Spt-Mir-130-P1a  Sto-Mir-130-P1a  Tgu-Mir-130-P1a  Tni-Mir-130-P1a2  Xla-Mir-130-P1a3  Xla-Mir-130-P1a4  Xtr-Mir-130-P1a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(LatCha1_add)
JH126620.1: 806769-806827 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
GAGGUGGCUGGCUCUAUACUGUUGGCCAGGGCCCUUUUUCUGUUGUACUACUGGAAAUUAAGAUGAGCAGUGCAAUAUUAAAAGGGCAUUGGCUGGCAGAAAUGCGACCCUCUUGAAAC
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Structure
        10          20        30        40        50         
GAGGUGGCUGGCUCUAUA--|   UG     G        UC         A  GGAAAU 
                    CUGU  GCCAG GCCCUUUU  UGUUGUACU CU      \
                    GACG  CGGUU CGGGAAAA  AUAACGUGA GA      U
CAAAGUUCUCCCAGCGUAAA^   GU     A        UU         C  GUAGAA 
       110       100        90        80        70        60
Deep sequencing
3' NTU Unknown
MotifsCNNC at 3p(+17)
Star sequence

Lch-Mir-130-P1a_5p* (predicted)

mirBase accessionNone
Sequence
0- GCCCUUUUUCUGUUGUACUACU -22
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Mature sequence

Lch-Mir-130-P1a_3p (predicted)

mirBase accessionNone
Sequence
37- CAGUGCAAUAUUAAAAGGGCAU -59
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