MirGeneDB ID | Lch-Mir-130-P1a |
---|---|
Family name | MIR-130 (all species) |
Seed | AGUGCAA |
Species | Coelacanth (Latimeria chalumnae) |
MiRBase ID | |
Paralogues | Lch-Mir-130-P1b Lch-Mir-130-P1c Lch-Mir-130-P1d Lch-Mir-130-P2a Lch-Mir-130-P2b Lch-Mir-130-P2d Lch-Mir-130-P3a Lch-Mir-130-P3b Lch-Mir-130-P3c Lch-Mir-130-P4a |
Orthologues | Aca-Mir-130-P1a Ami-Mir-130-P1a Cli-Mir-130-P1a Cmi-Mir-130-P1a Cpi-Mir-130-P1a Dre-Mir-130-P1a1 Dre-Mir-130-P1a2 Gga-Mir-130-P1a Gja-Mir-130-P1a Gmo-Mir-130-P1a1 Gmo-Mir-130-P1a2 Loc-Mir-130-P1a Mal-Mir-130-P1a1 Mal-Mir-130-P1a2 Mdo-Mir-130-P1a Mun-Mir-130-P1a Oan-Mir-130-P1a Pbv-Mir-130-P1a Sha-Mir-130-P1a Spt-Mir-130-P1a Sto-Mir-130-P1a Tgu-Mir-130-P1a Tni-Mir-130-P1a2 Xla-Mir-130-P1a3 Xla-Mir-130-P1a4 Xtr-Mir-130-P1a |
Node of Origin (locus) | Gnathostomata |
Node of Origin (family) | Vertebrata |
Genome context (LatCha1_add) |
JH126620.1: 806769-806827 [-] Ensembl |
Precursor (pre-Mir +30nt flank) | GAGGUGGCUGGCUCUAUACUGUUGGCCAGGGCCCUUUUUCUGUUGUACUACUGGAAAUUAAGAUGAGCAGUGCAAUAUUAAAAGGGCAUUGGCUGGCAGAAAUGCGACCCUCUUGAAACGet precursor sequence |
Structure | 10 20 30 40 50 GAGGUGGCUGGCUCUAUA--| UG G UC A GGAAAU CUGU GCCAG GCCCUUUU UGUUGUACU CU \ GACG CGGUU CGGGAAAA AUAACGUGA GA U CAAAGUUCUCCCAGCGUAAA^ GU A UU C GUAGAA 110 100 90 80 70 60 |
Deep sequencing | |
3' NTU | Unknown |
Motifs | CNNC at 3p(+17) |
Star sequence | Lch-Mir-130-P1a_5p* (predicted) |
mirBase accession | None |
Sequence |
0- GCCCUUUUUCUGUUGUACUACU -22
Get sequence
|
Mature sequence | Lch-Mir-130-P1a_3p (predicted) |
mirBase accession | None |
Sequence |
37- CAGUGCAAUAUUAAAAGGGCAU -59
Get sequence
|