MirGeneDB ID | Loc-Mir-130-P1a |
Family name |
MIR-130 (all species) |
Seed |
CUCUUUU |
Species |
Spotted gar (Lepisosteus oculatus) |
MiRBase ID |
|
Paralogues |
Loc-Mir-130-P1b
Loc-Mir-130-P2a
Loc-Mir-130-P2b
Loc-Mir-130-P3a
Loc-Mir-130-P4a
|
Orthologues |
Aca-Mir-130-P1a
Ami-Mir-130-P1a
Cli-Mir-130-P1a
Cmi-Mir-130-P1a
Cpi-Mir-130-P1a
Dre-Mir-130-P1a1
Dre-Mir-130-P1a2
Gga-Mir-130-P1a
Gja-Mir-130-P1a
Gmo-Mir-130-P1a1
Gmo-Mir-130-P1a2
Lch-Mir-130-P1a
Mal-Mir-130-P1a1
Mal-Mir-130-P1a2
Mdo-Mir-130-P1a
Mun-Mir-130-P1a
Oan-Mir-130-P1a
Pbv-Mir-130-P1a
Sha-Mir-130-P1a
Spt-Mir-130-P1a
Sto-Mir-130-P1a
Tgu-Mir-130-P1a
Tni-Mir-130-P1a2
Xla-Mir-130-P1a3
Xla-Mir-130-P1a4
Xtr-Mir-130-P1a
|
Node of Origin (locus) |
Gnathostomata
|
Node of Origin (family) |
Vertebrata
|
Genome context (LepOcu1) |
LG20: 1567777-1567836 [+]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UGACAUGGCUUUACUGUUUUGUUGUCCACGGCUCUUUUUCUGUUGUACUACUGUGAAAAACAGAUGAGCAGUGCAAUAUUAAAAGGGCAUUGGCUGACAGAAAAGCGACCCCCCCUUUCC
Get precursor sequence
|
Structure | 10 20 30 40 50
UGACAUGGCUUUACUGU--| U CG UC A GUGAAA
UUUGUUG CCA GCUCUUUU UGUUGUACU CU A
AGACAGU GGU CGGGAAAA AUAACGUGA GA A
CCUUUCCCCCCCAGCGAAA^ C UA UU C GUAGAC
. 110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17), UGUG in loop |
Tissue expression
|
Br |
Br |
He |
He |
He |
He |
Ov |
Ov |
Ov |
Ov |
Te |
Te |
Te |
Te |
To |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Mature sequence |
Loc-Mir-130-P1a_5p |
mirBase accession | None |
Sequence |
0- GCUCUUUUUCUGUUGUACUACU -22
Get sequence
|
Co-mature sequence |
Loc-Mir-130-P1a_3p |
mirBase accession | None |
Sequence |
38- CAGUGCAAUAUUAAAAGGGCAU -60
Get sequence
|