MirGeneDB 3.0
MirGeneDB ID

Loc-Mir-130-P4a

Family name MIR-130 (all species)
Seed CUCUUUC
Species Spotted gar (Lepisosteus oculatus)
MiRBase ID
Paralogues Loc-Mir-130-P1a  Loc-Mir-130-P1b  Loc-Mir-130-P2a  Loc-Mir-130-P2b  Loc-Mir-130-P3a 
Orthologues Aca-Mir-130-P4a  Bta-Mir-130-P4a  Cfa-Mir-130-P4a  Cja-Mir-130-P4a  Cmi-Mir-130-P4a  Cpi-Mir-130-P4a  Cpo-Mir-130-P4a  Dno-Mir-130-P4a  Dre-Mir-130-P4a1  Eca-Mir-130-P4a  Ete-Mir-130-P4a  Gga-Mir-130-P4a  Gja-Mir-130-P4a  Hsa-Mir-130-P4a  Laf-Mir-130-P4a  Lch-Mir-130-P4a  Mal-Mir-130-P4a1  Mdo-Mir-130-P4a  Mml-Mir-130-P4a  Mmr-Mir-130-P4a  Mmu-Mir-130-P4a  Mun-Mir-130-P4a  Ocu-Mir-130-P4a  Pab-Mir-130-P4a  Pbv-Mir-130-P4a  Rno-Mir-130-P4a  Sha-Mir-130-P4a  Spt-Mir-130-P4a  Sto-Mir-130-P4a  Tgu-Mir-130-P4a  Xla-Mir-130-P4a3  Xla-Mir-130-P4a4  Xtr-Mir-130-P4a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(LepOcu1)		 LG20: 1575811-1575871 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
CAGCGGACGGAAUCGAGCGUGUUGUCUGAGACUCUUUCCCUGUUGCACUACUGUGACAGCUACAGCUAGCAGUGCAAUAACGAAAGGGCGUCAGACACACGGCUAUCUCCUCCCCCGAGCC
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Structure
        10           20        30        40        50          
CAGCGGACGGAAUCGAG---|    U      GA       CC         A  GUGACAG 
                    CGUGU GUCUGA  CUCUUUC  UGUUGCACU CU       \
                    GCACA CAGACU  GGGAAAG  AUAACGUGA GA       C
CCGAGCCCCCUCCUCUAUCG^    -      GC       CA         C  UCGACAU 
 .       110       100         90        80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
Br Br He He He He Ov Ov Ov Ov Te Te Te Te To
Mature sequence

Loc-Mir-130-P4a_5p
mirBase accessionNone
Sequence 
0- ACUCUUUCCCUGUUGCACUACU -22
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Co-mature sequence

Loc-Mir-130-P4a_3p
mirBase accessionNone
Sequence 
39- CAGUGCAAUAACGAAAGGGCGU -61
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