Mir-130-P4a

MirGeneDB ID

Pab-Mir-130-P4a

Family name

MIR-130 (all species)

Seed

CUCUUUC

Species

Sumatran orangutan (Pongo abelii)

MiRBase ID

Paralogues

Pab-Mir-130-P1c Pab-Mir-130-P2a Pab-Mir-130-P2b Pab-Mir-130-P3b

Orthologues

Aca-Mir-130-P4a Bta-Mir-130-P4a Cfa-Mir-130-P4a Cja-Mir-130-P4a Cmi-Mir-130-P4a Cpi-Mir-130-P4a Cpo-Mir-130-P4a Dno-Mir-130-P4a Dre-Mir-130-P4a1 Eca-Mir-130-P4a Ete-Mir-130-P4a Gga-Mir-130-P4a Gja-Mir-130-P4a Hsa-Mir-130-P4a Laf-Mir-130-P4a Lch-Mir-130-P4a Loc-Mir-130-P4a Mal-Mir-130-P4a1 Mdo-Mir-130-P4a Mml-Mir-130-P4a Mmr-Mir-130-P4a Mmu-Mir-130-P4a Mun-Mir-130-P4a Ocu-Mir-130-P4a Pbv-Mir-130-P4a Rno-Mir-130-P4a Sha-Mir-130-P4a Spt-Mir-130-P4a Sto-Mir-130-P4a Tgu-Mir-130-P4a Xla-Mir-130-P4a3 Xla-Mir-130-P4a4 Xtr-Mir-130-P4a

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces)

CM068844.1: 26779575-26779634 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CUGGGGGAGGCACUGGCAGGCCUGCCCGACACUCUUUCCCUGUUGCACUACUAUGGGCCGCUGGGAAGCAGUGCAAUGAUGAAAGGGCAUCGGUCAGGUCCGGCCUGCUACCCUUGGAGG

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Structure

        10          20        30        40        50         
CUGGGGGAGGCACUGGCA--|     C    CA       CC         A  AUGGGC 
                    GGCCUG CCGA  CUCUUUC  UGUUGCACU CU      C
                    CUGGAC GGCU  GGGAAAG  GUAACGUGA GA      G
GGAGGUUCCCAUCGUCCGGC^     U    AC       UA         C  AGGGUC 
.       110       100        90        80        70        60

Deep sequencing

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3' NTU

Yes

Motifs

CNNC at 3p(+17)

Tissue expression

Br	Br	Li	Li

Mature sequence

Pab-Mir-130-P4a_5p

mirBase accession

None

Sequence

0- ACUCUUUCCCUGUUGCACUACU -22

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Co-mature sequence

Pab-Mir-130-P4a_3p

mirBase accession

None

Sequence

38- CAGUGCAAUGAUGAAAGGGCAU -60

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