| MirGeneDB ID | Pab-Mir-130-P3b |
|---|---|
| Family name | MIR-130 (all species) |
| Seed | AGUGCAA |
| Species | Sumatran orangutan (Pongo abelii) |
| MiRBase ID | |
| Paralogues | Pab-Mir-130-P1c Pab-Mir-130-P2a Pab-Mir-130-P2b Pab-Mir-130-P4a |
| Orthologues | Bta-Mir-130-P3b Cfa-Mir-130-P3b Cja-Mir-130-P3b Cmi-Mir-130-P3b Cpo-Mir-130-P3b Dno-Mir-130-P3b Dre-Mir-130-P3b1 Eca-Mir-130-P3b Gmo-Mir-130-P3b1 Hsa-Mir-130-P3b Laf-Mir-130-P3b Lch-Mir-130-P3b Mdo-Mir-130-P3b Mml-Mir-130-P3b Neu-Mir-130-P3b Oan-Mir-130-P3b Sha-Mir-130-P3b Sto-Mir-130-P3b |
| Node of Origin (locus) | Gnathostomata |
| Node of Origin (family) | Vertebrata |
| Genome context (GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces) |
CM054698.2: 56725892-56725956 [+] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | AAAAAAUUCUGUUUGUCACCAGAUCCUAGAACCCUAUCAAUAUUGUCUCUGCUGUGUAAAUAGUUCUGAGUAGUGCAAUAUUGCUUAUAGGGUUUUGGUGUUUGGGAAGAACAAUGUGCAGGCUGGet precursor sequence |
| Structure | 10 20 30 40 50 60 AAAAAAUUCUGUUUGUCA-- UC ---| CU GUGUAAA CCAGA CUAGAACCCUAU CAAUAUUGU CUGCU \ GGUUU GGUUUUGGGAUA GUUAUAACG GAUGA U GUCGGACGUGUAACAAGAAG GU UUC^ U- GUCUUGA 120 110 100 90 80 70 |
| Deep sequencing | |
| 3' NTU | No |
| Motifs | UGUG in loop |
| Star sequence | Pab-Mir-130-P3b_5p* (predicted) |
| mirBase accession | None |
| Sequence |
0- ACCCUAUCAAUAUUGUCUCUGCU -23
Get sequence
|
| Mature sequence | Pab-Mir-130-P3b_3p |
| mirBase accession | None |
| Sequence |
40- UAGUGCAAUAUUGCUUAUAGGGUUU -65
Get sequence
|
