| MirGeneDB ID | Cja-Mir-130-P3b |
|---|---|
| Family name | MIR-130 (all species) |
| Seed | AGUGCAA |
| Species | White-tufted-ear marmoset (Callithrix jacchus) |
| MiRBase ID | |
| Paralogues | Cja-Mir-130-P1c Cja-Mir-130-P2a Cja-Mir-130-P2b Cja-Mir-130-P4a |
| Orthologues | Bta-Mir-130-P3b Cfa-Mir-130-P3b Cmi-Mir-130-P3b Cpo-Mir-130-P3b Dno-Mir-130-P3b Dre-Mir-130-P3b1 Eca-Mir-130-P3b Gmo-Mir-130-P3b1 Hsa-Mir-130-P3b Laf-Mir-130-P3b Lch-Mir-130-P3b Mdo-Mir-130-P3b Mml-Mir-130-P3b Neu-Mir-130-P3b Oan-Mir-130-P3b Pab-Mir-130-P3b Sha-Mir-130-P3b Sto-Mir-130-P3b |
| Node of Origin (locus) | Gnathostomata |
| Node of Origin (family) | Vertebrata |
| Genome context (GCA_011100555.2_mCalJa1.2.pat.X_genomic) |
CM021919.1: 89817611-89817675 [-] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | AAAAAAAUCUGUUUAUCACCAGAUCCUAGAACCCUAUCAAUAUUAUCUGUGCUAUGUAAAUAGUUCUGAAUAGUGCAAUAUGGCUUAUAGGGUUUUGGUGUUUGGGAAGAACAAUGGGCAGGCUGGet precursor sequence |
| Structure | 10 20 30 40 50 60 AAAAAAAUCUGUUUAUCA--| UC CAAUAU C UG AUGUAAAU CCAGA CUAGAACCCUAU UAU UG CU A GGUUU GGUUUUGGGAUA AUA AC GA G GUCGGACGGGUAACAAGAAG^ GU UUCGGU - GU UAAGUCUU 120 110 100 90 80 70 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | No |
| Star sequence | Cja-Mir-130-P3b_5p* (predicted) |
| mirBase accession | None |
| Sequence |
0- ACCCUAUCAAUAUUAUCUGUGCU -23
Get sequence
|
| Mature sequence | Cja-Mir-130-P3b_3p (predicted) |
| mirBase accession | None |
| Sequence |
40- UAGUGCAAUAUGGCUUAUAGGGUUU -65
Get sequence
|
