MirGeneDB 2.1

MirGeneDB ID

Gmo-Mir-130-P3b1

Family name MIR-130 (all species)
Seed AGUGCAA
Species Cod (Gadus morhua)
MiRBase ID gmo-mir-454
Paralogues Gmo-Mir-130-P1a1  Gmo-Mir-130-P1a2  Gmo-Mir-130-P2a1  Gmo-Mir-130-P2a2  Gmo-Mir-130-P2b1 
Orthologues Bta-Mir-130-P3b  Cfa-Mir-130-P3b  Cmi-Mir-130-P3b  Cpo-Mir-130-P3b  Dno-Mir-130-P3b  Dre-Mir-130-P3b1  Hsa-Mir-130-P3b  Lch-Mir-130-P3b  Mdo-Mir-130-P3b  Mml-Mir-130-P3b  Oan-Mir-130-P3b  Sha-Mir-130-P3b  Sto-Mir-130-P3b 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Vertebrata
Genome context
(Gadus_morhua.gadMor1.dna.toplevel)
GeneScaffold_4358: 10709-10773 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-130-P3b1)
Mir-130-P3b1 GeneScaffold_4358: 10709-10773 [-] UCSC Ensembl
Mir-130-P2b1 GeneScaffold_4358: 10925-10986 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GUAAUCUUGCAUUUACCAGAAAAUCCUGCAACCCUAUCAGUAUUGCCCCUGCUGUCCACUGAGUUCAGAGUAGUGCAAUAUUGCUUAUAGGGUUUCAGUGUUGGUCUUAAAACUUGGCUCAUGGC
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Structure
        10         20         30           40        50        60 
GUAAUCUUGCAUUUACC-   A-  UC   C        ---|        CC     GUCCACU 
                  AGA  AA  CUG AACCCUAU   CAGUAUUGC  CUGCU       \
                  UCU  UU  GAC UUGGGAUA   GUUAUAACG  GAUGA       G
CGGUACUCGGUUCAAAAU   GG  GU   U        UUC^        U-     GACUUGA 
   120       110       100        90        80         70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
Br Gi He In Li Sk Sp Wh
Star sequence

Gmo-Mir-130-P3b1_5p*

mirBase accessionNone
Sequence
0- ACCCUAUCAGUAUUGCCCCUGCU -23
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Mature sequence

Gmo-Mir-130-P3b1_3p

mirBase accessionMIMAT0044282
Sequence
40- UAGUGCAAUAUUGCUUAUAGGGUUU -65
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