Mir-130-P3b

MirGeneDB ID

Neu-Mir-130-P3b

Family name

MIR-130 (all species)

Seed

AGUGCAA

Species

Tammar Wallaby (Notamacropus eugenii)

MiRBase ID

Paralogues

Neu-Mir-130-P1c

Orthologues

Bta-Mir-130-P3b Cfa-Mir-130-P3b Cja-Mir-130-P3b Cmi-Mir-130-P3b Cpo-Mir-130-P3b Dno-Mir-130-P3b Dre-Mir-130-P3b1 Eca-Mir-130-P3b Gmo-Mir-130-P3b1 Hsa-Mir-130-P3b Laf-Mir-130-P3b Lch-Mir-130-P3b Mdo-Mir-130-P3b Mml-Mir-130-P3b Oan-Mir-130-P3b Pab-Mir-130-P3b Sha-Mir-130-P3b Sto-Mir-130-P3b

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(GCA_028372415.1_mMacEug1.pri)

CM051814.1: 371892143-371892207 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CAUUUCCUGUUGAUACUACCAGAUCCUAGAACCCUAUCGAUAUUGUCUCUGCUGUGUACAUAGCUGUGAGUAGUGCAAUAUUGCUUAUAGGGUUUUAGUGUUUGGAAAGAACAGUGGCCAGGCUG

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Structure

        10          20        30           40        50        60 
CAUUUCCUGUUGAUACUA--     UC            ---|        CU     GUGUACA 
                    CCAGA  CUAGAACCCUAU   CGAUAUUGU  CUGCU       \
                    GGUUU  GAUUUUGGGAUA   GUUAUAACG  GAUGA       U
GUCGGACCGGUGACAAGAAA     GU            UUC^        U-     GUGUCGA 
   120       110       100        90        80         70

Deep sequencing

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3' NTU

Motifs

UGUG in loop

Tissue expression

Br	Ce	Fi	Li	Mi	Mi	Mi	Mi	Mi	Ov	Se	Se	Te	Te	Te

Star sequence

Neu-Mir-130-P3b_5p*

mirBase accession

None

Sequence

0- ACCCUAUCGAUAUUGUCUCUGCU -23

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Mature sequence

Neu-Mir-130-P3b_3p

mirBase accession

None

Sequence

40- UAGUGCAAUAUUGCUUAUAGGGUUU -65

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