Mir-130-P3b

MirGeneDB ID

Eca-Mir-130-P3b

Family name

MIR-130 (all species)

Seed

AGUGCAA

Species

Horse (Equus caballus)

MiRBase ID

eca-mir-454

Paralogues

Eca-Mir-130-P1c Eca-Mir-130-P2a Eca-Mir-130-P2b Eca-Mir-130-P4a

Orthologues

Bta-Mir-130-P3b Cfa-Mir-130-P3b Cja-Mir-130-P3b Cmi-Mir-130-P3b Cpo-Mir-130-P3b Dno-Mir-130-P3b Dre-Mir-130-P3b1 Gmo-Mir-130-P3b1 Hsa-Mir-130-P3b Laf-Mir-130-P3b Lch-Mir-130-P3b Mdo-Mir-130-P3b Mml-Mir-130-P3b Neu-Mir-130-P3b Oan-Mir-130-P3b Pab-Mir-130-P3b Sha-Mir-130-P3b Sto-Mir-130-P3b

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(GCA_002863925.1_EquCab3.0)

CM009158.1: 33581060-33581124 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-130-P3b)

Mir-130-P3b CM009158.1: 33581060-33581124 [-] UCSC Ensembl
Mir-130-P2b CM009158.1: 33590204-33590265 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

AAUAUUUCCUGUUAACCACCAGAUCCUAGAACCCUAUCGAUAUUGUCUCUGCUGUGUAAAUCGCUCUGAGUAGUGCAAUAUUGCUUAUAGGGUUUUGGUGUUUGGGAAGAACAAUGAGGAGGCUG

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Structure

        10          20        30           40        50        60 
AAUAUUUCCUGUUAACCA--     UC            ---|        CU     GUGUAAA 
                    CCAGA  CUAGAACCCUAU   CGAUAUUGU  CUGCU       \
                    GGUUU  GGUUUUGGGAUA   GUUAUAACG  GAUGA       U
GUCGGAGGAGUAACAAGAAG     GU            UUC^        U-     GUCUCGC 
   120       110       100        90        80         70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UGUG in loop

Tissue expression

Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er

Star sequence

Eca-Mir-130-P3b_5p*

mirBase accession

None

Sequence

0- ACCCUAUCGAUAUUGUCUCUGCU -23

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Mature sequence

Eca-Mir-130-P3b_3p

mirBase accession

MIMAT0013042

Sequence

40- UAGUGCAAUAUUGCUUAUAGGGUUU -65

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