MirGeneDB 3.0

MirGeneDB ID

Cpo-Mir-130-P3b

Family name MIR-130 (all species)
Seed AGUGCAA
Species Guinea pig (Cavia porcellus)
MiRBase ID cpo-mir-454
Paralogues Cpo-Mir-130-P1c  Cpo-Mir-130-P2a  Cpo-Mir-130-P2b  Cpo-Mir-130-P4a 
Orthologues Bta-Mir-130-P3b  Cfa-Mir-130-P3b  Cja-Mir-130-P3b  Cmi-Mir-130-P3b  Dno-Mir-130-P3b  Dre-Mir-130-P3b1  Eca-Mir-130-P3b  Gmo-Mir-130-P3b1  Hsa-Mir-130-P3b  Laf-Mir-130-P3b  Lch-Mir-130-P3b  Mdo-Mir-130-P3b  Mml-Mir-130-P3b  Neu-Mir-130-P3b  Oan-Mir-130-P3b  Pab-Mir-130-P3b  Sha-Mir-130-P3b  Sto-Mir-130-P3b 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(cavPor3)
scaffold_32: 7083450-7083514 [-] UCSC
Clustered miRNAs
(< 50kb from Mir-130-P3b)
Mir-130-P3b scaffold_32: 7083450-7083514 [-] UCSC
Mir-130-P2b scaffold_32: 7094160-7094221 [-] UCSC
Precursor
(pre-Mir +30nt flank)
CAGAUUUCCUGUUUAUUACCAGAUCCUAGAACCCUAUCAAUAUUGUCUCUGCUGUAUAAAUAGCUCUGAGUAGUGCAAUAUUGCUUAUAGGGUUUUGGUAUUUGGGAAAAACAAUGGGCAGGCUG
Get precursor sequence
Structure
        10          20        30           40        50        60 
CAGAUUUCCUGUUUAUUA--      C            ---|        CU     GUAUAAA 
                    CCAGAU CUAGAACCCUAU   CAAUAUUGU  CUGCU       \
                    GGUUUA GGUUUUGGGAUA   GUUAUAACG  GAUGA       U
GUCGGACGGGUAACAAAAAG      U            UUC^        U-     GUCUCGA 
   120       110       100        90        80         70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsNo
Tissue expression
 +
Bl Bl Bl Bl Oo Oo Oo Oo To Wh
Star sequence

Cpo-Mir-130-P3b_5p*

mirBase accessionMIMAT0047269
Sequence
0- ACCCUAUCAAUAUUGUCUCUGCU -23
Get sequence
Mature sequence

Cpo-Mir-130-P3b_3p

mirBase accessionMIMAT0047270
Sequence
40- UAGUGCAAUAUUGCUUAUAGGGUUU -65
Get sequence