MirGeneDB ID | Sto-Mir-130-P3b |
Family name |
MIR-130 (all species) |
Seed |
AGUGCAA |
Species |
Cloudy Catshark (Scyliorhinus torazame) |
MiRBase ID |
|
Paralogues |
Sto-Mir-130-P1a
Sto-Mir-130-P1b
Sto-Mir-130-P1c
Sto-Mir-130-P2a
Sto-Mir-130-P2b
Sto-Mir-130-P3a
Sto-Mir-130-P3c
Sto-Mir-130-P4a
|
Orthologues |
Bta-Mir-130-P3b
Cfa-Mir-130-P3b
Cja-Mir-130-P3b
Cmi-Mir-130-P3b
Cpo-Mir-130-P3b
Dno-Mir-130-P3b
Dre-Mir-130-P3b1
Eca-Mir-130-P3b
Gmo-Mir-130-P3b1
Hsa-Mir-130-P3b
Laf-Mir-130-P3b
Lch-Mir-130-P3b
Mdo-Mir-130-P3b
Mml-Mir-130-P3b
Neu-Mir-130-P3b
Oan-Mir-130-P3b
Pab-Mir-130-P3b
Sha-Mir-130-P3b
|
Node of Origin (locus) |
Gnathostomata
|
Node of Origin (family) |
Vertebrata
|
Genome context (GCA_003427355_STO_add) |
BFAA01005977.1: 175036-175100 [+]
|
Precursor (pre-Mir +30nt flank) |
CAGUUUUUCUUUUGAUGCUCAGGUACUGGGACCCUAUCGAUAUUGCCUCUGCUUUGUAGAUAGCUGUGAGUAGUGCAAUAUUGCUUAUAGGGUUUCAGUGUUUGGGAAUUGCAGCGGCCCGGCUU
Get precursor sequence
|
Structure | 10 20 30 40 50 60
CAGUUUUUCUUUUGAUG-- GG GG ---| CU UUGUAGA
CUCA UACUG ACCCUAU CGAUAUUGC CUGCU \
GGGU GUGAC UGGGAUA GUUAUAACG GAUGA U
UUCGGCCCGGCGACGUUAA UU UU UUC^ U- GUGUCGA
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Sto-Mir-130-P3b_5p* |
mirBase accession | None |
Sequence |
0- ACCCUAUCGAUAUUGCCUCUGCU -23
Get sequence
|
Mature sequence |
Sto-Mir-130-P3b_3p |
mirBase accession | None |
Sequence |
40- UAGUGCAAUAUUGCUUAUAGGGUUU -65
Get sequence
|