Mir-130-P2b

MirGeneDB ID

Sto-Mir-130-P2b

Family name

MIR-130 (all species)

Seed

AGUGCAA

Species

Cloudy Catshark (Scyliorhinus torazame)

MiRBase ID

Paralogues

Sto-Mir-130-P1a Sto-Mir-130-P1b Sto-Mir-130-P1c Sto-Mir-130-P2a Sto-Mir-130-P3a Sto-Mir-130-P3b Sto-Mir-130-P3c Sto-Mir-130-P4a

Orthologues

Aca-Mir-130-P2b Ami-Mir-130-P2b Bta-Mir-130-P2b Cfa-Mir-130-P2b Cja-Mir-130-P2b Cli-Mir-130-P2b Cmi-Mir-130-P2b Cpi-Mir-130-P2b Cpo-Mir-130-P2b Dno-Mir-130-P2b Dre-Mir-130-P2b1 Eca-Mir-130-P2b Ete-Mir-130-P2b Gga-Mir-130-P2b Gja-Mir-130-P2b Gmo-Mir-130-P2b1 Hsa-Mir-130-P2b Laf-Mir-130-P2b Lch-Mir-130-P2b Loc-Mir-130-P2b Mal-Mir-130-P2b2 Mdo-Mir-130-P2b Mml-Mir-130-P2b Mmr-Mir-130-P2b Mmu-Mir-130-P2b Mun-Mir-130-P2b Oan-Mir-130-P2b Ocu-Mir-130-P2b Pab-Mir-130-P2b Pbv-Mir-130-P2b Rno-Mir-130-P2b Sha-Mir-130-P2b Spt-Mir-130-P2b Tgu-Mir-130-P2b Xla-Mir-130-P2b3 Xla-Mir-130-P2b4 Xtr-Mir-130-P2b

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(GCA_003427355_STO_add)

BFAA01005977.1: 164715-164776 [+]

Precursor
(pre-Mir +30nt flank)

UACUUUUUUUCAGGCUUGCUGCUGACGGACGCUCUGACUUUAUUGCACUACUGUGUUUCACAGCUAGCAGUGCAAUAGUAUUGUCAAAGCAUCUGAAGGUAGUUCUGAUCACCCACAGGCAG

Get precursor sequence

Structure

        10          20        30           40        50         
UACUUUUUUUCAGGCUU--      GA    C   C    U---|         A  GUGUUU 
                   GCUGCU  CGGA GCU UGAC    UUAUUGCACU CU      \
                   UGAUGG  GUCU CGA ACUG    GAUAACGUGA GA      C
GACGGACACCCACUAGUCU      AA    A   A    UUAU^         C  UCGACA 
120       110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17), UGUG in loop

Tissue expression

To

Star sequence

Sto-Mir-130-P2b_5p*

mirBase accession

None

Sequence

0- GCUCUGACUUUAUUGCACUACU -22

Get sequence

Mature sequence

Sto-Mir-130-P2b_3p

mirBase accession

None

Sequence

37- CAGUGCAAUAGUAUUGUCAAAGCAU -62

Get sequence