MirGeneDB 3.0
MirGeneDB ID

Gja-Mir-130-P2b

Family name MIR-130 (all species)
Seed AGUGCAA
Species Schlegels Japanese gecko (Gekko japonicus)
MiRBase ID
Paralogues Gja-Mir-130-P1a  Gja-Mir-130-P1b  Gja-Mir-130-P1c  Gja-Mir-130-P2a  Gja-Mir-130-P3a  Gja-Mir-130-P4a 
Orthologues Aca-Mir-130-P2b  Ami-Mir-130-P2b  Bta-Mir-130-P2b  Cfa-Mir-130-P2b  Cja-Mir-130-P2b  Cli-Mir-130-P2b  Cmi-Mir-130-P2b  Cpi-Mir-130-P2b  Cpo-Mir-130-P2b  Dno-Mir-130-P2b  Dre-Mir-130-P2b1  Eca-Mir-130-P2b  Ete-Mir-130-P2b  Gga-Mir-130-P2b  Gmo-Mir-130-P2b1  Hsa-Mir-130-P2b  Laf-Mir-130-P2b  Lch-Mir-130-P2b  Loc-Mir-130-P2b  Mal-Mir-130-P2b2  Mdo-Mir-130-P2b  Mml-Mir-130-P2b  Mmr-Mir-130-P2b  Mmu-Mir-130-P2b  Mun-Mir-130-P2b  Oan-Mir-130-P2b  Ocu-Mir-130-P2b  Pab-Mir-130-P2b  Pbv-Mir-130-P2b  Rno-Mir-130-P2b  Sha-Mir-130-P2b  Spt-Mir-130-P2b  Sto-Mir-130-P2b  Tgu-Mir-130-P2b  Xla-Mir-130-P2b3  Xla-Mir-130-P2b4  Xtr-Mir-130-P2b 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCF_001447785.1_Gekko_japonicus)		 NW_015174315.1: 146123-146180 [+]
Precursor
(pre-Mir +30nt flank)
CUCCAGAAGUAUCUCUCUGCUGACGAGCGCUCUGACUUCAUUGCACUACUGUUCCUUCCAGCUAGCAGUGCAAUAGUAUUGUCAAAGCACCUGGAAGCAGAACCUGCAGCAACUCCCU
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Structure
        10          20        30           40        50       
CUCCAGAAGUAUCUCUC--    GA  AGC   C    UUC---|       A  GUUCCU 
                   UGCU  CG   GCU UGAC      AUUGCACU CU      \
                   ACGA  GU   CGA ACUG      UAACGUGA GA      U
UCCCUCAACGACGUCCAAG    AG  CCA   A    UUAUGA^       C  UCGACC 
      110       100        90        80        70        60
Deep sequencing
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CommentThere is a second Drosha cut -2 on both arms.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
To
Star sequence

Gja-Mir-130-P2b_5p*
mirBase accessionNone
Sequence 
0- UCUGACUUCAUUGCACUACU -20
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Mature sequence

Gja-Mir-130-P2b_3p
mirBase accessionNone
Sequence 
35- CAGUGCAAUAGUAUUGUCAAAGC -58
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