MirGeneDB 3.0

MirGeneDB ID

Gmo-Mir-130-P2b1

Family name MIR-130 (all species)
Seed AGUGCAA
Species Cod (Gadus morhua)
MiRBase ID gmo-mir-301a
Paralogues Gmo-Mir-130-P1a1  Gmo-Mir-130-P1a2  Gmo-Mir-130-P2a1  Gmo-Mir-130-P2a2  Gmo-Mir-130-P3b1 
Orthologues Aca-Mir-130-P2b  Ami-Mir-130-P2b  Bta-Mir-130-P2b  Cfa-Mir-130-P2b  Cja-Mir-130-P2b  Cli-Mir-130-P2b  Cmi-Mir-130-P2b  Cpi-Mir-130-P2b  Cpo-Mir-130-P2b  Dno-Mir-130-P2b  Dre-Mir-130-P2b1  Eca-Mir-130-P2b  Ete-Mir-130-P2b  Gga-Mir-130-P2b  Gja-Mir-130-P2b  Hsa-Mir-130-P2b  Laf-Mir-130-P2b  Lch-Mir-130-P2b  Loc-Mir-130-P2b  Mdo-Mir-130-P2b  Mml-Mir-130-P2b  Mmr-Mir-130-P2b  Mmu-Mir-130-P2b  Mun-Mir-130-P2b  Oan-Mir-130-P2b  Ocu-Mir-130-P2b  Pab-Mir-130-P2b  Pbv-Mir-130-P2b  Rno-Mir-130-P2b  Sha-Mir-130-P2b  Spt-Mir-130-P2b  Sto-Mir-130-P2b  Tgu-Mir-130-P2b  Xtr-Mir-130-P2b 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Vertebrata
Genome context
(Gadus_morhua.gadMor1.dna.toplevel)
GeneScaffold_4358: 10925-10986 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-130-P2b1)
Mir-130-P3b1 GeneScaffold_4358: 10709-10773 [-] UCSC Ensembl
Mir-130-P2b1 GeneScaffold_4358: 10925-10986 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UGAACCCACCUGACAAUGCUGCUGGCAGGUGCUCUGACUUCAUUGCACUACUGUAUUGGACAGCUAGCAGUGCAAUAGUAUUGUCAAAGCAUCUGAUGGUUGCUGAGAUCAACUCUCCCUGA
Get precursor sequence
Structure
        10          20        30        40           50         
UGAACCCACCUGACAAU--  U   GG        C    UUC---|       A  GUAUUG 
                   GC GCU  CAGGUGCU UGAC      AUUGCACU CU      \
                   CG UGG  GUCUACGA ACUG      UAACGUGA GA      G
AGUCCCUCUCAACUAGAGU  U   UA        A    UUAUGA^       C  UCGACA 
120       110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
 +
Br Gi He In Li Sk Sp Wh
Star sequence

Gmo-Mir-130-P2b1_5p*

mirBase accessionMIMAT0044283
Sequence
0- GCUCUGACUUCAUUGCACUACU -22
Get sequence
Mature sequence

Gmo-Mir-130-P2b1_3p

mirBase accessionMIMAT0044284
Sequence
37- CAGUGCAAUAGUAUUGUCAAAGCAU -62
Get sequence