MirGeneDB 3.0
MirGeneDB ID

Laf-Mir-130-P2b

Family name MIR-130 (all species)
Seed AGUGCAA
Species African bush elephant (Loxodonta africana)
MiRBase ID
Paralogues Laf-Mir-130-P1c  Laf-Mir-130-P2a  Laf-Mir-130-P3b  Laf-Mir-130-P4a 
Orthologues Aca-Mir-130-P2b  Ami-Mir-130-P2b  Bta-Mir-130-P2b  Cfa-Mir-130-P2b  Cja-Mir-130-P2b  Cli-Mir-130-P2b  Cmi-Mir-130-P2b  Cpi-Mir-130-P2b  Cpo-Mir-130-P2b  Dno-Mir-130-P2b  Dre-Mir-130-P2b1  Eca-Mir-130-P2b  Ete-Mir-130-P2b  Gga-Mir-130-P2b  Gja-Mir-130-P2b  Gmo-Mir-130-P2b1  Hsa-Mir-130-P2b  Lch-Mir-130-P2b  Loc-Mir-130-P2b  Mal-Mir-130-P2b2  Mdo-Mir-130-P2b  Mml-Mir-130-P2b  Mmr-Mir-130-P2b  Mmu-Mir-130-P2b  Mun-Mir-130-P2b  Oan-Mir-130-P2b  Ocu-Mir-130-P2b  Pab-Mir-130-P2b  Pbv-Mir-130-P2b  Rno-Mir-130-P2b  Sha-Mir-130-P2b  Spt-Mir-130-P2b  Sto-Mir-130-P2b  Tgu-Mir-130-P2b  Xla-Mir-130-P2b3  Xla-Mir-130-P2b4  Xtr-Mir-130-P2b 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCA_000001905.1_Loxafr3.0)		 GL010058.1: 9734224-9734285 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UUCCUUUCCCACCUAUUGCUGCUAACGAAUGCUCUGACUUUAUUGCACUACUGUACUUUACAGCUAGCAGUGCAAUAGUAUUGUCAAAGCAUCUGAAAGCAGGAUGCACACCAGAAUUUUAA
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Structure
        10          20        30           40        50         
UUCCUUUCCCACCUAUUG--     AA  A     C    U---|         A  GUACUU 
                    CUGCU  CG AUGCU UGAC    UUAUUGCACU CU      \
                    GACGA  GU UACGA ACUG    GAUAACGUGA GA      U
AAUUUUAAGACCACACGUAG     AA  C     A    UUAU^         C  UCGACA 
120       110       100        90        80        70        60
Deep sequencing
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3' NTU Unknown
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
Wh
Star sequence

Laf-Mir-130-P2b_5p* (predicted)
mirBase accessionNone
Sequence 
0- GCUCUGACUUUAUUGCACUACU -22
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Mature sequence

Laf-Mir-130-P2b_3p
mirBase accessionNone
Sequence 
37- CAGUGCAAUAGUAUUGUCAAAGCAU -62
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