MirGeneDB ID | Laf-Mir-130-P1c |
---|---|
Family name | MIR-130 (all species) |
Seed | AGUGCAA |
Species | African bush elephant (Loxodonta africana) |
MiRBase ID | |
Paralogues | Laf-Mir-130-P2a Laf-Mir-130-P2b Laf-Mir-130-P3b Laf-Mir-130-P4a |
Orthologues | Aca-Mir-130-P1c Ami-Mir-130-P1c Bta-Mir-130-P1c Cfa-Mir-130-P1c Cja-Mir-130-P1c Cpi-Mir-130-P1c Cpo-Mir-130-P1c Dno-Mir-130-P1c Eca-Mir-130-P1c Ete-Mir-130-P1c Gja-Mir-130-P1c Hsa-Mir-130-P1c Lch-Mir-130-P1c Mdo-Mir-130-P1c Mml-Mir-130-P1c Mmr-Mir-130-P1c Mmu-Mir-130-P1c Mun-Mir-130-P1c Neu-Mir-130-P1c Oan-Mir-130-P1c Ocu-Mir-130-P1c Pab-Mir-130-P1c Pbv-Mir-130-P1c Rno-Mir-130-P1c Sha-Mir-130-P1c Spt-Mir-130-P1c Sto-Mir-130-P1c |
Node of Origin (locus) | Gnathostomata |
Node of Origin (family) | Vertebrata |
Genome context (GCA_000001905.1_Loxafr3.0) |
GL010142.1: 1425421-1425482 [+] UCSC Ensembl |
Precursor (pre-Mir +30nt flank) | GCAGAGCCAGCGCCUCUGCUGCUGGCCAGAGCUCUUUUCACAUUGUGCUACUGUCUGCACCUAUCACUAGCAGUGCAAUGUUAAAAGGGCAUUGGCCGGGUAGUGCUACCCAGCGUUGGCUGGet precursor sequence |
Structure | 10 20 30 40 50 60 GCAGAGCCAGCGCCUCU- -| A C UG A GUCUGCA GCUG CUGGCCAG GCUCUUUU ACAUUG CU CU C UGAU GGCCGGUU CGGGAAAA UGUAAC GA GA C GUCGGUUGCGACCCAUCG G^ A U GU C UCACUAU 120 110 100 90 80 70 |
Deep sequencing | |
Comment | The post-transcriptional addition of a terminal 3' uridine is supported by the existence of multiple examples of 3' DcRNA reads that start with the U in human and several other vertebrates. All other taxa are treated accordingly. |
3' NTU | Yes |
Motifs | UG at 5p(-14) |
Star sequence | Laf-Mir-130-P1c_5p* |
mirBase accession | None |
Sequence |
0- GCUCUUUUCACAUUGUGCUACU -22
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Mature sequence | Laf-Mir-130-P1c_3p |
mirBase accession | None |
Sequence |
40- CAGUGCAAUGUUAAAAGGGCAU -62
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