MirGeneDB 3.0
MirGeneDB ID

Sha-Mir-130-P1c

Family name MIR-130 (all species)
Seed AGUGCAA
Species Tasmanian devil (Sarcophilus harrisii)
MiRBase ID sha-mir-130a
Paralogues Sha-Mir-130-P1a  Sha-Mir-130-P1b  Sha-Mir-130-P2b  Sha-Mir-130-P3b  Sha-Mir-130-P4a 
Orthologues Aca-Mir-130-P1c  Ami-Mir-130-P1c  Bta-Mir-130-P1c  Cfa-Mir-130-P1c  Cja-Mir-130-P1c  Cpi-Mir-130-P1c  Cpo-Mir-130-P1c  Dno-Mir-130-P1c  Eca-Mir-130-P1c  Ete-Mir-130-P1c  Gja-Mir-130-P1c  Hsa-Mir-130-P1c  Laf-Mir-130-P1c  Lch-Mir-130-P1c  Mdo-Mir-130-P1c  Mml-Mir-130-P1c  Mmr-Mir-130-P1c  Mmu-Mir-130-P1c  Mun-Mir-130-P1c  Neu-Mir-130-P1c  Oan-Mir-130-P1c  Ocu-Mir-130-P1c  Pab-Mir-130-P1c  Pbv-Mir-130-P1c  Rno-Mir-130-P1c  Spt-Mir-130-P1c  Sto-Mir-130-P1c 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(DEVIL_add)		 GL864900.1: 1865398-1865459 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AAGCAAGCCAGCUUUCCACUCCUGGCCGGGGCUCUUUUCACAUUGUGCUACUGUCUGCACCUGUCACUAGCAGUGCAAUGUAAAAAGGGCAUUGGCCGGGCAGUACCCACCUGCACCGGCCU
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Structure
        10         20         30        40        50        60
AAGCAAGCCAGCUUUCC-   -|        G        C      UG  A  GUCUGCA 
                  ACU CCUGGCCGG GCUCUUUU ACAUUG  CU CU       C
                  UGA GGGCCGGUU CGGGAAAA UGUAAC  GA GA       C
UCCGGCCACGUCCACCCA   C^        A        A      GU  C  UCACUGU 
120       110       100        90        80        70
Deep sequencing
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CommentThe post-transcriptional addition of a terminal 3' uridine is supported by the existence of multiple examples of 3' DcRNA reads that start with the U in human and several other vertebrates. All other taxa are treated accordingly.
3' NTU Yes
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Bo Br He Ki Li Ly Pa Sk Sp Te
Star sequence

Sha-Mir-130-P1c_5p*
mirBase accessionNone
Sequence 
0- GCUCUUUUCACAUUGUGCUACU -22
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Mature sequence

Sha-Mir-130-P1c_3p
mirBase accessionMIMAT0022830
Sequence 
40- CAGUGCAAUGUAAAAAGGGCAU -62
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