MirGeneDB 3.0
MirGeneDB ID

Sha-Mir-130-P4a

Family name MIR-130 (all species)
Seed AGUGCAA
Species Tasmanian devil (Sarcophilus harrisii)
MiRBase ID
Paralogues Sha-Mir-130-P1a  Sha-Mir-130-P1b  Sha-Mir-130-P1c  Sha-Mir-130-P2b  Sha-Mir-130-P3b 
Orthologues Aca-Mir-130-P4a  Bta-Mir-130-P4a  Cfa-Mir-130-P4a  Cja-Mir-130-P4a  Cmi-Mir-130-P4a  Cpi-Mir-130-P4a  Cpo-Mir-130-P4a  Dno-Mir-130-P4a  Dre-Mir-130-P4a1  Eca-Mir-130-P4a  Ete-Mir-130-P4a  Gga-Mir-130-P4a  Gja-Mir-130-P4a  Hsa-Mir-130-P4a  Laf-Mir-130-P4a  Lch-Mir-130-P4a  Loc-Mir-130-P4a  Mal-Mir-130-P4a1  Mdo-Mir-130-P4a  Mml-Mir-130-P4a  Mmr-Mir-130-P4a  Mmu-Mir-130-P4a  Mun-Mir-130-P4a  Ocu-Mir-130-P4a  Pab-Mir-130-P4a  Pbv-Mir-130-P4a  Rno-Mir-130-P4a  Spt-Mir-130-P4a  Sto-Mir-130-P4a  Tgu-Mir-130-P4a  Xla-Mir-130-P4a3  Xla-Mir-130-P4a4  Xtr-Mir-130-P4a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(DEVIL_add)		 GL841680.1: 146016-146072 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CAGGGGGAGGGGCCGCAGGAGCUGCCCAAGGCUCUUUCCCUGUUGCCCUGCUGUAUGUCCCUGAGCAGUGCAAUUGUGAAAGGGCAUUGGUCAAGCUUCCCUUGGACCCUGGUGGGG
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Structure
        10         20         30        40        50        
CAGGGGGAGGGGCCGCA-      GC-|   G        CCU     C     GUAUG 
                  GGAGCU   CCAA GCUCUUUC   GUUGC CUGCU     \
                  CUUCGA   GGUU CGGGAAAG   UAACG GACGA     U
GGGGUGGUCCCAGGUUCC      ACU^   A        UGU     U     GUCCC 
     110       100        90        80        70        60
Deep sequencing
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3' NTU Yes
MotifsNo
Tissue expression
-   +
Bo Br He Ki Li Ly Pa Sk Sp Te
Star sequence

Sha-Mir-130-P4a_5p*
mirBase accessionNone
Sequence 
0- GCUCUUUCCCUGUUGCCCUGCU -22
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Mature sequence

Sha-Mir-130-P4a_3p
mirBase accessionNone
Sequence 
35- CAGUGCAAUUGUGAAAGGGCAU -57
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