MirGeneDB 3.0

MirGeneDB ID

Spt-Mir-130-P4a

Family name MIR-130 (all species)
Seed AGUGCAA
Species Tuatara (Sphenodon punctatus)
MiRBase ID
Paralogues Spt-Mir-130-P1a  Spt-Mir-130-P1b  Spt-Mir-130-P1c  Spt-Mir-130-P2a  Spt-Mir-130-P2b  Spt-Mir-130-P3a 
Orthologues Aca-Mir-130-P4a  Bta-Mir-130-P4a  Cfa-Mir-130-P4a  Cja-Mir-130-P4a  Cmi-Mir-130-P4a  Cpi-Mir-130-P4a  Cpo-Mir-130-P4a  Dno-Mir-130-P4a  Dre-Mir-130-P4a1  Eca-Mir-130-P4a  Ete-Mir-130-P4a  Gga-Mir-130-P4a  Gja-Mir-130-P4a  Hsa-Mir-130-P4a  Laf-Mir-130-P4a  Lch-Mir-130-P4a  Loc-Mir-130-P4a  Mal-Mir-130-P4a1  Mdo-Mir-130-P4a  Mml-Mir-130-P4a  Mmr-Mir-130-P4a  Mmu-Mir-130-P4a  Mun-Mir-130-P4a  Ocu-Mir-130-P4a  Pab-Mir-130-P4a  Pbv-Mir-130-P4a  Rno-Mir-130-P4a  Sha-Mir-130-P4a  Sto-Mir-130-P4a  Tgu-Mir-130-P4a  Xla-Mir-130-P4a3  Xla-Mir-130-P4a4  Xtr-Mir-130-P4a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCA_003113815.1_ASM311381v1_TUATARA)
QEPC01011180.1: 5877745-5877805 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UGCUGAGGAGCACCGGACAGGUUGGCUGGCACUCUUUCCCUGUUGCACUACUGUCAAACUUGCAGCUAGCAGUGCAAUAAUGAAAGGGCGUCAGUCUGCUGGGGAGCGGCAAGAGCAAGGG
Get precursor sequence
Structure
        10           20        30        40        50          
UGCUGAGGAGCACCGGA---|  GUU       A       CC         A  GUCAAAC 
                    CAG   GGCUGGC CUCUUUC  UGUUGCACU CU       \
                    GUC   CUGACUG GGGAAAG  AUAACGUGA GA       U
GGGAACGAGAACGGCGAGGG^  GU-       C       UA         C  UCGACGU 
 .       110       100         90        80        70
Deep sequencing
3' NTU Unknown
MotifsCNNC at 3p(+17)
Star sequence

Spt-Mir-130-P4a_5p* (predicted)

mirBase accessionNone
Sequence
0- ACUCUUUCCCUGUUGCACUACU -22
Get sequence
Mature sequence

Spt-Mir-130-P4a_3p (predicted)

mirBase accessionNone
Sequence
39- CAGUGCAAUAAUGAAAGGGCGU -61
Get sequence