| MirGeneDB ID | Cja-Mir-130-P4a |
|---|---|
| Family name | MIR-130 (all species) |
| Seed | AGUGCAA |
| Species | White-tufted-ear marmoset (Callithrix jacchus) |
| MiRBase ID | |
| Paralogues | Cja-Mir-130-P1c Cja-Mir-130-P2a Cja-Mir-130-P2b Cja-Mir-130-P3b |
| Orthologues | Aca-Mir-130-P4a Bta-Mir-130-P4a Cfa-Mir-130-P4a Cmi-Mir-130-P4a Cpi-Mir-130-P4a Cpo-Mir-130-P4a Dno-Mir-130-P4a Dre-Mir-130-P4a1 Eca-Mir-130-P4a Ete-Mir-130-P4a Gga-Mir-130-P4a Gja-Mir-130-P4a Hsa-Mir-130-P4a Laf-Mir-130-P4a Lch-Mir-130-P4a Loc-Mir-130-P4a Mal-Mir-130-P4a1 Mdo-Mir-130-P4a Mml-Mir-130-P4a Mmr-Mir-130-P4a Mmu-Mir-130-P4a Mun-Mir-130-P4a Ocu-Mir-130-P4a Pab-Mir-130-P4a Pbv-Mir-130-P4a Rno-Mir-130-P4a Sha-Mir-130-P4a Spt-Mir-130-P4a Sto-Mir-130-P4a Tgu-Mir-130-P4a Xla-Mir-130-P4a3 Xla-Mir-130-P4a4 Xtr-Mir-130-P4a |
| Node of Origin (locus) | Gnathostomata |
| Node of Origin (family) | Vertebrata |
| Genome context (GCA_011100555.2_mCalJa1.2.pat.X_genomic) |
CM021915.1: 190723217-190723276 [+] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | AUGGGGGAGGUACUGGCAGGCCUGCCUGAUACUCUUUCCCUGUUGCACUACUGUGGGCCACUGGAAAGCAGUGCAAUGAUGAAAGGGCAUCGGUCAGGUACCGCCUGCUACCCUGGGAGGGet precursor sequence |
| Structure | 10 20 30 40 50 AUGGGGGAGGUACUGGCAG--| C A CC A GUGGGC GCCUG CUGAU CUCUUUC UGUUGCACU CU C UGGAC GGCUA GGGAAAG GUAACGUGA GA A GGAGGGUCCCAUCGUCCGCCA^ U C UA C AAGGUC . 110 100 90 80 70 60 |
| Deep sequencing | |
| 3' NTU | Yes |
| Motifs | CNNC at 3p(+17), UGUG in loop |
| Star sequence | Cja-Mir-130-P4a_5p* |
| mirBase accession | None |
| Sequence |
0- ACUCUUUCCCUGUUGCACUACU -22
Get sequence
|
| Mature sequence | Cja-Mir-130-P4a_3p |
| mirBase accession | None |
| Sequence |
38- CAGUGCAAUGAUGAAAGGGCAU -60
Get sequence
|
