MirGeneDB ID | Cja-Mir-130-P4a |
Family name |
MIR-130 (all species) |
Seed |
AGUGCAA |
Species |
White-tufted-ear marmoset (Callithrix jacchus) |
MiRBase ID |
|
Paralogues |
Cja-Mir-130-P1c
Cja-Mir-130-P2a
Cja-Mir-130-P2b
Cja-Mir-130-P3b
|
Orthologues |
Aca-Mir-130-P4a
Bta-Mir-130-P4a
Cfa-Mir-130-P4a
Cmi-Mir-130-P4a
Cpi-Mir-130-P4a
Cpo-Mir-130-P4a
Dno-Mir-130-P4a
Dre-Mir-130-P4a1
Eca-Mir-130-P4a
Ete-Mir-130-P4a
Gga-Mir-130-P4a
Gja-Mir-130-P4a
Hsa-Mir-130-P4a
Laf-Mir-130-P4a
Lch-Mir-130-P4a
Loc-Mir-130-P4a
Mal-Mir-130-P4a1
Mdo-Mir-130-P4a
Mml-Mir-130-P4a
Mmr-Mir-130-P4a
Mmu-Mir-130-P4a
Mun-Mir-130-P4a
Ocu-Mir-130-P4a
Pab-Mir-130-P4a
Pbv-Mir-130-P4a
Rno-Mir-130-P4a
Sha-Mir-130-P4a
Spt-Mir-130-P4a
Sto-Mir-130-P4a
Tgu-Mir-130-P4a
Xla-Mir-130-P4a3
Xla-Mir-130-P4a4
Xtr-Mir-130-P4a
|
Node of Origin (locus) |
Gnathostomata
|
Node of Origin (family) |
Vertebrata
|
Genome context (GCA_011100555.2_mCalJa1.2.pat.X_genomic) |
CM021915.1: 190723217-190723276 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
AUGGGGGAGGUACUGGCAGGCCUGCCUGAUACUCUUUCCCUGUUGCACUACUGUGGGCCACUGGAAAGCAGUGCAAUGAUGAAAGGGCAUCGGUCAGGUACCGCCUGCUACCCUGGGAGG
Get precursor sequence
|
Structure | 10 20 30 40 50
AUGGGGGAGGUACUGGCAG--| C A CC A GUGGGC
GCCUG CUGAU CUCUUUC UGUUGCACU CU C
UGGAC GGCUA GGGAAAG GUAACGUGA GA A
GGAGGGUCCCAUCGUCCGCCA^ U C UA C AAGGUC
. 110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
Yes
|
Motifs | CNNC at 3p(+17), UGUG in loop |
Tissue expression
|
|
Star sequence |
Cja-Mir-130-P4a_5p* |
mirBase accession | None |
Sequence |
0- ACUCUUUCCCUGUUGCACUACU -22
Get sequence
|
Mature sequence |
Cja-Mir-130-P4a_3p |
mirBase accession | None |
Sequence |
38- CAGUGCAAUGAUGAAAGGGCAU -60
Get sequence
|