MirGeneDB ID | Cja-Mir-130-P2a |
---|---|
Family name | MIR-130 (all species) |
Seed | AGUGCAA |
Species | White-tufted-ear marmoset (Callithrix jacchus) |
MiRBase ID | |
Paralogues | Cja-Mir-130-P1c Cja-Mir-130-P2b Cja-Mir-130-P3b Cja-Mir-130-P4a |
Orthologues | Aca-Mir-130-P2a Ami-Mir-130-P2a Bta-Mir-130-P2a Cfa-Mir-130-P2a Cli-Mir-130-P2a Cmi-Mir-130-P2a Cpi-Mir-130-P2a Cpo-Mir-130-P2a Dno-Mir-130-P2a Dre-Mir-130-P2a1 Dre-Mir-130-P2a2 Eca-Mir-130-P2a Gga-Mir-130-P2a Gja-Mir-130-P2a Gmo-Mir-130-P2a1 Gmo-Mir-130-P2a2 Hsa-Mir-130-P2a Laf-Mir-130-P2a Lch-Mir-130-P2a Loc-Mir-130-P2a Mal-Mir-130-P2a1 Mal-Mir-130-P2a2 Mml-Mir-130-P2a Mmr-Mir-130-P2a Mmu-Mir-130-P2a Mun-Mir-130-P2a Oan-Mir-130-P2a Ocu-Mir-130-P2a Pab-Mir-130-P2a Pbv-Mir-130-P2a Rno-Mir-130-P2a Spt-Mir-130-P2a Sto-Mir-130-P2a Tgu-Mir-130-P2a Tni-Mir-130-P2a2 Xla-Mir-130-P2a3 Xla-Mir-130-P2a4 Xtr-Mir-130-P2a |
Node of Origin (locus) | Gnathostomata |
Node of Origin (family) | Vertebrata |
Genome context (GCA_011100555.2_mCalJa1.2.pat.X_genomic) |
CM021915.1: 190722894-190722953 [+] UCSC Ensembl |
Precursor (pre-Mir +30nt flank) | GUGGUGGGAUCCCCCCUGCUGGCCGCAGGUGCUCUGACUAGGUUGCACUACUGUGCUCUGAGAAGCAGUGCAAUGAUAUUGUCAAAGCAUCUGGGACCAGCCUUGGGGACUUCCCUCCCCGet precursor sequence |
Structure | 10 20 30 40 50 GUGGUGGGAUCCCCCCU-- - G C UAG---| A GUGCU GCUGG CC CAGGUGCU UGAC GUUGCACU CU \ CGACC GG GUCUACGA ACUG UAACGUGA GA C CCCCUCCCUUCAGGGGUUC A - A UUAUAG^ C AGAGU . 110 100 90 80 70 60 |
Deep sequencing | |
3' NTU | Unknown |
Motifs | UG at 5p(-14), UGUG in loop |
Star sequence | Cja-Mir-130-P2a_5p* (predicted) |
mirBase accession | None |
Sequence |
0- GCUCUGACUAGGUUGCACUACU -22
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|
Mature sequence | Cja-Mir-130-P2a_3p |
mirBase accession | None |
Sequence |
35- CAGUGCAAUGAUAUUGUCAAAGCAU -60
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|