MirGeneDB 3.0

MirGeneDB ID

Cja-Mir-130-P2a

Family name MIR-130 (all species)
Seed AGUGCAA
Species White-tufted-ear marmoset (Callithrix jacchus)
MiRBase ID
Paralogues Cja-Mir-130-P1c  Cja-Mir-130-P2b  Cja-Mir-130-P3b  Cja-Mir-130-P4a 
Orthologues Aca-Mir-130-P2a  Ami-Mir-130-P2a  Bta-Mir-130-P2a  Cfa-Mir-130-P2a  Cli-Mir-130-P2a  Cmi-Mir-130-P2a  Cpi-Mir-130-P2a  Cpo-Mir-130-P2a  Dno-Mir-130-P2a  Dre-Mir-130-P2a1  Dre-Mir-130-P2a2  Eca-Mir-130-P2a  Gga-Mir-130-P2a  Gja-Mir-130-P2a  Gmo-Mir-130-P2a1  Gmo-Mir-130-P2a2  Hsa-Mir-130-P2a  Laf-Mir-130-P2a  Lch-Mir-130-P2a  Loc-Mir-130-P2a  Mal-Mir-130-P2a1  Mal-Mir-130-P2a2  Mml-Mir-130-P2a  Mmr-Mir-130-P2a  Mmu-Mir-130-P2a  Mun-Mir-130-P2a  Oan-Mir-130-P2a  Ocu-Mir-130-P2a  Pab-Mir-130-P2a  Pbv-Mir-130-P2a  Rno-Mir-130-P2a  Spt-Mir-130-P2a  Sto-Mir-130-P2a  Tgu-Mir-130-P2a  Tni-Mir-130-P2a2  Xla-Mir-130-P2a3  Xla-Mir-130-P2a4  Xtr-Mir-130-P2a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCA_011100555.2_mCalJa1.2.pat.X_genomic)
CM021915.1: 190722894-190722953 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GUGGUGGGAUCCCCCCUGCUGGCCGCAGGUGCUCUGACUAGGUUGCACUACUGUGCUCUGAGAAGCAGUGCAAUGAUAUUGUCAAAGCAUCUGGGACCAGCCUUGGGGACUUCCCUCCCC
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Structure
        10          20         30        40           50        
GUGGUGGGAUCCCCCCU--     -  G        C    UAG---|       A  GUGCU 
                   GCUGG CC CAGGUGCU UGAC      GUUGCACU CU     \
                   CGACC GG GUCUACGA ACUG      UAACGUGA GA     C
CCCCUCCCUUCAGGGGUUC     A  -        A    UUAUAG^       C  AGAGU 
.       110       100         90        80        70        60
Deep sequencing
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3' NTU Unknown
MotifsUG at 5p(-14), UGUG in loop
Tissue expression
 +
To
Star sequence

Cja-Mir-130-P2a_5p* (predicted)

mirBase accessionNone
Sequence
0- GCUCUGACUAGGUUGCACUACU -22
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Mature sequence

Cja-Mir-130-P2a_3p

mirBase accessionNone
Sequence
35- CAGUGCAAUGAUAUUGUCAAAGCAU -60
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