Mir-130-P2a2

MirGeneDB ID

Mal-Mir-130-P2a2

Family name

MIR-130 (all species)

Seed

AGUGCAA

Species

Asian swamp eel (Monopterus albus)

MiRBase ID

Paralogues

Mal-Mir-130-P1a1 Mal-Mir-130-P1a2 Mal-Mir-130-P2a1 Mal-Mir-130-P2b2 Mal-Mir-130-P3a1 Mal-Mir-130-P4a1

Orthologues

Aca-Mir-130-P2a Ami-Mir-130-P2a Bta-Mir-130-P2a Cfa-Mir-130-P2a Cja-Mir-130-P2a Cli-Mir-130-P2a Cmi-Mir-130-P2a Cpi-Mir-130-P2a Cpo-Mir-130-P2a Dno-Mir-130-P2a Dre-Mir-130-P2a2 Eca-Mir-130-P2a Gga-Mir-130-P2a Gja-Mir-130-P2a Gmo-Mir-130-P2a2 Hsa-Mir-130-P2a Laf-Mir-130-P2a Lch-Mir-130-P2a Loc-Mir-130-P2a Mml-Mir-130-P2a Mmr-Mir-130-P2a Mmu-Mir-130-P2a Mun-Mir-130-P2a Oan-Mir-130-P2a Ocu-Mir-130-P2a Pab-Mir-130-P2a Pbv-Mir-130-P2a Rno-Mir-130-P2a Spt-Mir-130-P2a Sto-Mir-130-P2a Tgu-Mir-130-P2a Tni-Mir-130-P2a2 Xtr-Mir-130-P2a

Node of Origin (locus)

Clupeocephala

Node of Origin (family)

Vertebrata

Genome context
(GCA_001952655.1_M_albus_1.0_genomic)

KV884763.1: 518814-518876 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UCCACCUGCUGACACGUGCUGAGGUCAGCUGCUUUGACAAUGUUGCACUACUGUACCAUCCAUUCUAGCAGUGCAAUAGUAUUGUCAUAGCAUUUGGCCCCAGCUCCCUCUGUACGGGUGCUA

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Structure

        10          20        30        40           50         
UCCACCUGCUGACACGU--    A      C    U       ---|       A  GUACCA 
                   GCUG GGUCAG UGCU UGACAAU   GUUGCACU CU      U
                   CGAC CCGGUU ACGA ACUGUUA   UAACGUGA GA      C
AUCGUGGGCAUGUCUCCCU    C      U    U       UGA^       C  UCUUAC 
 120       110       100        90        80        70        60

Deep sequencing

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3' NTU

Motifs

UG at 5p(-14)

Tissue expression

Fe	Fe	In	Ma	Ma

Star sequence

Mal-Mir-130-P2a2_5p*

mirBase accession

None

Sequence

0- GCUUUGACAAUGUUGCACUACU -22

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Mature sequence

Mal-Mir-130-P2a2_3p

mirBase accession

None

Sequence

38- CAGUGCAAUAGUAUUGUCAUAGCAU -63

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