Mir-130-P2a

MirGeneDB ID

Oan-Mir-130-P2a

Family name

MIR-130 (all species)

Seed

AGUGCAA

Species

Platypus (Ornithorhynchus anatinus)

MiRBase ID

Paralogues

Oan-Mir-130-P1a Oan-Mir-130-P1b Oan-Mir-130-P1c Oan-Mir-130-P2b Oan-Mir-130-P3b

Orthologues

Aca-Mir-130-P2a Ami-Mir-130-P2a Bta-Mir-130-P2a Cfa-Mir-130-P2a Cja-Mir-130-P2a Cli-Mir-130-P2a Cmi-Mir-130-P2a Cpi-Mir-130-P2a Cpo-Mir-130-P2a Dno-Mir-130-P2a Dre-Mir-130-P2a1 Dre-Mir-130-P2a2 Eca-Mir-130-P2a Gga-Mir-130-P2a Gja-Mir-130-P2a Gmo-Mir-130-P2a1 Gmo-Mir-130-P2a2 Hsa-Mir-130-P2a Laf-Mir-130-P2a Lch-Mir-130-P2a Loc-Mir-130-P2a Mal-Mir-130-P2a1 Mal-Mir-130-P2a2 Mml-Mir-130-P2a Mmr-Mir-130-P2a Mmu-Mir-130-P2a Mun-Mir-130-P2a Ocu-Mir-130-P2a Pab-Mir-130-P2a Pbv-Mir-130-P2a Rno-Mir-130-P2a Spt-Mir-130-P2a Sto-Mir-130-P2a Tgu-Mir-130-P2a Tni-Mir-130-P2a2 Xla-Mir-130-P2a3 Xla-Mir-130-P2a4 Xtr-Mir-130-P2a

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(mOrnAna1.p.v1_plustraces)

NC_041748.1: 23340756-23340817 [-]

Precursor
(pre-Mir +30nt flank)

CGGGAGGGGCCGCCCCCGCUGCCGCCGGCGGCUCUGACGAUAUUGCACUACUGUGCGCUCAGGGAAGCAGUGCAAUAGUAUUGUCAAAGCAUCGGGCGCCAGCUCCGCGGGCUCCCCUUCCG

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Structure

        10          20        30        40           50         
CGGGAGGGGCCGCCCCC--    C    GGCG   C         ---|     A  GUGCGC 
                   GCUG CGCC    GCU UGACGAUAU   UGCACU CU      \
                   CGAC GCGG    CGA ACUGUUAUG   ACGUGA GA      U
GCCUUCCCCUCGGGCGCCU    C    GCUA   A         AUA^     C  AGGGAC 
120       110       100        90        80        70        60

Deep sequencing

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3' NTU

Motifs

UGUG in loop

Tissue expression

Br	Ce	He	Ki	Te

Star sequence

Oan-Mir-130-P2a_5p*

mirBase accession

None

Sequence

0- GCUCUGACGAUAUUGCACUACU -22

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Mature sequence

Oan-Mir-130-P2a_3p

mirBase accession

None

Sequence

37- CAGUGCAAUAGUAUUGUCAAAGCAU -62

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