| MirGeneDB ID | Pab-Mir-130-P2a |
|---|---|
| Family name | MIR-130 (all species) |
| Seed | AGUGCAA |
| Species | Sumatran orangutan (Pongo abelii) |
| MiRBase ID | |
| Paralogues | Pab-Mir-130-P1c Pab-Mir-130-P2b Pab-Mir-130-P3b Pab-Mir-130-P4a |
| Orthologues | Aca-Mir-130-P2a Ami-Mir-130-P2a Bta-Mir-130-P2a Cfa-Mir-130-P2a Cja-Mir-130-P2a Cli-Mir-130-P2a Cmi-Mir-130-P2a Cpi-Mir-130-P2a Cpo-Mir-130-P2a Dno-Mir-130-P2a Dre-Mir-130-P2a1 Dre-Mir-130-P2a2 Eca-Mir-130-P2a Gga-Mir-130-P2a Gja-Mir-130-P2a Gmo-Mir-130-P2a1 Gmo-Mir-130-P2a2 Hsa-Mir-130-P2a Laf-Mir-130-P2a Lch-Mir-130-P2a Loc-Mir-130-P2a Mal-Mir-130-P2a1 Mal-Mir-130-P2a2 Mml-Mir-130-P2a Mmr-Mir-130-P2a Mmu-Mir-130-P2a Mun-Mir-130-P2a Oan-Mir-130-P2a Ocu-Mir-130-P2a Pbv-Mir-130-P2a Rno-Mir-130-P2a Spt-Mir-130-P2a Sto-Mir-130-P2a Tgu-Mir-130-P2a Tni-Mir-130-P2a2 Xla-Mir-130-P2a3 Xla-Mir-130-P2a4 Xtr-Mir-130-P2a |
| Node of Origin (locus) | Gnathostomata |
| Node of Origin (family) | Vertebrata |
| Genome context (GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces) |
CM068844.1: 26779899-26779958 [-] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | GUGGUGGGGUCCCCCCUGCUGGCCGCAGGUGCUCUGACGAGGUUGCACUACUGUGCUCUGAGAAGCAGUGCAAUGAUAUUGUCAAAGCAUCUGGGACCAGCCUUGGGGAUCUCCCUCCCUGet precursor sequence |
| Structure | 10 20 30 40 50 GUGGUGGGGUCCCCCCU-- - G C G---| A GUGCU GCUGG CC CAGGUGCU UGACGA GUUGCACU CU \ CGACC GG GUCUACGA ACUGUU UAACGUGA GA C UCCCUCCCUCUAGGGGUUC A - A AUAG^ C AGAGU . 110 100 90 80 70 60 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | UG at 5p(-14), UGUG in loop |
| Star sequence | Pab-Mir-130-P2a_5p* (predicted) |
| mirBase accession | None |
| Sequence |
0- GCUCUGACGAGGUUGCACUACU -22
Get sequence
|
| Mature sequence | Pab-Mir-130-P2a_3p |
| mirBase accession | None |
| Sequence |
35- CAGUGCAAUGAUAUUGUCAAAGCAU -60
Get sequence
|
