MirGeneDB 3.0

MirGeneDB ID

Dre-Mir-130-P2a2

Family name MIR-130 (all species)
Seed AGUGCAA
Species Zebrafish (Danio rerio)
MiRBase ID dre-mir-301c
Paralogues Dre-Mir-130-P1a1  Dre-Mir-130-P1a2  Dre-Mir-130-P1b1  Dre-Mir-130-P2a1  Dre-Mir-130-P2b1  Dre-Mir-130-P3a1  Dre-Mir-130-P3b1  Dre-Mir-130-P4a1 
Orthologues Aca-Mir-130-P2a  Ami-Mir-130-P2a  Bta-Mir-130-P2a  Cfa-Mir-130-P2a  Cja-Mir-130-P2a  Cli-Mir-130-P2a  Cmi-Mir-130-P2a  Cpi-Mir-130-P2a  Cpo-Mir-130-P2a  Dno-Mir-130-P2a  Eca-Mir-130-P2a  Gga-Mir-130-P2a  Gja-Mir-130-P2a  Gmo-Mir-130-P2a2  Hsa-Mir-130-P2a  Laf-Mir-130-P2a  Lch-Mir-130-P2a  Loc-Mir-130-P2a  Mal-Mir-130-P2a2  Mml-Mir-130-P2a  Mmr-Mir-130-P2a  Mmu-Mir-130-P2a  Mun-Mir-130-P2a  Oan-Mir-130-P2a  Ocu-Mir-130-P2a  Pab-Mir-130-P2a  Pbv-Mir-130-P2a  Rno-Mir-130-P2a  Spt-Mir-130-P2a  Sto-Mir-130-P2a  Tgu-Mir-130-P2a  Tni-Mir-130-P2a2  Xtr-Mir-130-P2a 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Vertebrata
Genome context
(danRer11)
chr10: 17454501-17454563 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-130-P2a2)
Mir-130-P1a2 chr10: 17453405-17453463 [+] UCSC Ensembl
Mir-130-P2a2 chr10: 17454501-17454563 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UGUCCGCGUGCUGAUGUGCUGAGGUCAGCUGCUCUGACGAUGUUGCACUACUGUACCAUCCAUUCUAGCAGUGCAAUAGUAUUGUCAUAGCAUUUAGCCUCUGAUAUGCUCAACGCACACAGG
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Structure
        10        20          30        40           50         
UGUCCGCGUGCUGAUGUGCU--    UC  C    C       ---|       A  GUACCA 
                      GAGG  AG UGCU UGACGAU   GUUGCACU CU      U
                      CUCC  UU ACGA ACUGUUA   UAACGUGA GA      C
GGACACACGCAACUCGUAUAGU    GA  U    U       UGA^       C  UCUUAC 
 120       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
 +
Br Br Em Ey Gu Gu He Li Li Ov Te
Star sequence

Dre-Mir-130-P2a2_5p*

mirBase accessionMIMAT0031991
Sequence
0- GCUCUGACGAUGUUGCACUACU -22
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Mature sequence

Dre-Mir-130-P2a2_3p

mirBase accessionMIMAT0001872
Sequence
38- CAGUGCAAUAGUAUUGUCAUAGCAU -63
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Proposed targets TargetScanFish: dre-miR-301c