MirGeneDB 3.0
MirGeneDB ID

Dre-Mir-130-P3b1

Family name MIR-130 (all species)
Seed AGUGCAA
Species Zebrafish (Danio rerio)
MiRBase ID dre-mir-454a
Paralogues Dre-Mir-130-P1a1  Dre-Mir-130-P1a2  Dre-Mir-130-P1b1  Dre-Mir-130-P2a1  Dre-Mir-130-P2a2  Dre-Mir-130-P2b1  Dre-Mir-130-P3a1  Dre-Mir-130-P4a1 
Orthologues Bta-Mir-130-P3b  Cfa-Mir-130-P3b  Cja-Mir-130-P3b  Cmi-Mir-130-P3b  Cpo-Mir-130-P3b  Dno-Mir-130-P3b  Eca-Mir-130-P3b  Gmo-Mir-130-P3b1  Hsa-Mir-130-P3b  Laf-Mir-130-P3b  Lch-Mir-130-P3b  Mdo-Mir-130-P3b  Mml-Mir-130-P3b  Neu-Mir-130-P3b  Oan-Mir-130-P3b  Pab-Mir-130-P3b  Sha-Mir-130-P3b  Sto-Mir-130-P3b 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Vertebrata
Genome context
(danRer11)		 chr10: 33376841-33376905 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-130-P3b1)		 Mir-130-P3b1 chr10: 33376841-33376905 [-] UCSC Ensembl
Mir-130-P2b1 chr10: 33377012-33377073 [-] UCSC Ensembl
Mir-130-P1b1 chr10: 33377140-33377202 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GUCGUUUAAGAAUUAAUCCUAAUUCUUGGGACCCUAUCAGUAUUGCCUCUGCUGUCCACUGUGUUCAGAGUAGUGCAAUAUUGCUAAUAGGGUUUUAGGUUUUAGGUUGUACCUUCAGUCAGAUG
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Structure
        10          20        30           40        50        60 
GUCGUUUAAGAAUUAAU--     UU             ---|        CU     GUCCACU 
                   CCUAA  CUUGGGACCCUAU   CAGUAUUGC  CUGCU       \
                   GGAUU  GGAUUUUGGGAUA   GUUAUAACG  GAUGA       G
GUAGACUGACUUCCAUGUU     UU             AUC^        U-     GACUUGU 
   120       110       100        90        80         70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Br Br Em Ey Gu Gu He Li Li Ov Te
Star sequence

Dre-Mir-130-P3b1_5p*
mirBase accessionNone
Sequence 
0- ACCCUAUCAGUAUUGCCUCUGCU -23
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Mature sequence

Dre-Mir-130-P3b1_3p
mirBase accessionMIMAT0001877
Sequence 
40- UAGUGCAAUAUUGCUAAUAGGGUUU -65
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Proposed targets TargetScanFish: dre-miR-454a